Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11200

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,143,105	+				+0.2
2,143,152	-				-0.6
2,143,232	-				-0.5
2,143,257	-				+1.2
2,143,257	-				-0.2
2,143,282	+				+0.9
2,143,311	-				-1.3
2,143,311	-				-1.1
2,143,336	+				+0.6
2,143,359	+				-1.5
2,143,360	-				-1.3
2,143,360	-				-0.2
2,143,486	-				+3.7
2,143,496	-				+1.5
2,143,500	+				+1.7
2,143,500	+				+0.2
2,143,500	+				-0.4
2,143,501	-				-0.7
2,143,501	-				-0.0
2,143,501	-				+0.2
2,143,615	+				-1.4
2,143,630	+				-0.3
2,143,631	-				-0.1
2,143,631	-				-1.0
2,143,640	+				-0.5
2,143,641	-				-1.1
2,143,641	-				+0.7
2,143,678	-				-1.2
2,143,851	-				-0.4
2,143,875	-				+1.5
2,143,918	+				+0.3
2,143,926	+				-1.9
2,143,966	+				+0.3
2,143,990	-				-1.7
2,143,990	-				+0.7
2,144,561	-				-0.4
2,144,561	-				+1.5
2,144,564	+				-0.3
2,144,564	+				-1.0
2,144,565	-				-0.9
2,144,565	-				-0.4
2,144,565	-				-0.2
2,144,565	-				+0.3
2,144,565	-				+0.9
2,144,565	-				+1.5
2,144,565	-				+2.3
2,144,565	-				+1.5
2,144,565	-				-0.1
2,144,565	-				-0.5
2,144,565	-				+1.7
2,144,566	+				+1.4
2,144,583	-				-1.0
2,144,727	+		LU632_RS11205	0.22	-1.9
2,144,727	+		LU632_RS11205	0.22	-0.5
2,144,981	-		LU632_RS11205	0.83	+0.2
2,144,992	-		LU632_RS11205	0.85	+1.2
2,145,126	+				+1.6
2,145,138	-				-1.8
2,145,138	-				+1.1
2,145,192	-				-1.7
2,145,330	+				-0.1
2,145,330	+				-1.1
2,145,331	-				-0.6
2,145,331	-				+0.6
2,145,331	-				+1.0
2,145,400	-				+0.9
2,145,426	+				-1.3