Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11180

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,137,386	+				+3.0
2,137,387	-				-1.2
2,137,431	+				+1.9
2,138,137	+				-2.6
2,138,138	-				-0.8
2,138,274	-				-0.6
2,138,276	+				-2.5
2,138,276	+				+1.3
2,138,307	+				+0.5
2,138,308	-				-0.4
2,138,412	+				-0.9
2,138,452	-				-2.4
2,138,502	+				-0.1
2,138,502	+				+1.8
2,138,503	-				+2.0
2,138,509	-		LU632_RS11180	0.10	+0.4
2,138,542	+		LU632_RS11180	0.13	-0.3
2,138,560	-		LU632_RS11180	0.15	-2.0
2,138,620	+		LU632_RS11180	0.20	+0.6
2,138,780	+		LU632_RS11180	0.33	-1.3
2,138,781	-		LU632_RS11180	0.33	-0.4
2,138,815	+		LU632_RS11180	0.36	+0.5
2,138,840	+		LU632_RS11180	0.38	+2.2
2,138,841	-		LU632_RS11180	0.38	+0.4
2,138,841	-		LU632_RS11180	0.38	-0.8
2,138,841	-		LU632_RS11180	0.38	-3.0
2,138,886	+		LU632_RS11180	0.42	-0.5
2,138,937	-		LU632_RS11180	0.47	-0.2
2,138,975	-		LU632_RS11180	0.50	+0.4
2,139,081	+		LU632_RS11180	0.59	+0.5
2,139,127	+		LU632_RS11180	0.63	-2.0
2,139,169	-		LU632_RS11180	0.66	-0.5
2,139,169	-		LU632_RS11180	0.66	-1.1
2,139,394	+		LU632_RS11180	0.85	-1.1
2,139,394	+		LU632_RS11180	0.85	-1.2
2,139,395	-		LU632_RS11180	0.85	-1.1
2,139,497	+				+0.8
2,139,498	-				-2.2
2,139,522	+				-0.3
2,139,523	-				-1.7
2,139,525	+				+1.3
2,139,526	-				+0.8
2,139,526	-				+1.6
2,139,533	-				-1.3
2,139,543	-				+0.5
2,139,581	+				+1.4
2,139,642	+				-1.1
2,139,642	+				+0.5
2,139,642	+				-1.1
2,139,679	+				+0.6
2,139,679	+				+0.5
2,139,680	-				+0.2
2,139,783	-		LU632_RS11185	0.11	+0.9
2,139,822	+		LU632_RS11185	0.16	-1.9
2,139,826	+		LU632_RS11185	0.16	-1.6
2,139,870	-		LU632_RS11185	0.21	+0.8
2,139,870	-		LU632_RS11185	0.21	+1.5
2,139,964	+		LU632_RS11185	0.31	+0.5
2,139,965	-		LU632_RS11185	0.31	-0.3
2,139,984	+		LU632_RS11185	0.34	+0.7
2,139,984	+		LU632_RS11185	0.34	+4.1
2,139,985	-		LU632_RS11185	0.34	+2.8
2,140,008	+		LU632_RS11185	0.36	+0.1
2,140,008	+		LU632_RS11185	0.36	-1.8
2,140,041	+		LU632_RS11185	0.40	-0.5
2,140,047	+		LU632_RS11185	0.41	-0.6
2,140,047	+		LU632_RS11185	0.41	+1.0
2,140,047	+		LU632_RS11185	0.41	-0.7
2,140,048	-		LU632_RS11185	0.41	-0.7
2,140,048	-		LU632_RS11185	0.41	-0.5
2,140,048	-		LU632_RS11185	0.41	-0.8
2,140,132	+		LU632_RS11185	0.50	-2.3
2,140,279	+		LU632_RS11185	0.66	-1.3
2,140,297	+		LU632_RS11185	0.68	+0.1
2,140,421	+		LU632_RS11185	0.82	-0.4
2,140,422	-		LU632_RS11185	0.82	+1.1
2,140,538	+				-0.5