Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10995

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,098,425	+		LU632_RS10990	0.66	+2.7
2,098,425	+		LU632_RS10990	0.66	+1.7
2,098,425	+		LU632_RS10990	0.66	+2.1
2,098,431	+		LU632_RS10990	0.66	+3.9
2,098,464	+		LU632_RS10990	0.68	+1.6
2,098,484	+		LU632_RS10990	0.69	+2.8
2,098,485	-		LU632_RS10990	0.69	+3.4
2,098,553	+		LU632_RS10990	0.73	+2.0
2,098,605	+		LU632_RS10990	0.76	+2.3
2,098,724	-		LU632_RS10990	0.83	+1.9
2,098,764	+		LU632_RS10990	0.85	+2.8
2,098,764	+		LU632_RS10990	0.85	+3.4
2,098,765	-		LU632_RS10990	0.85	+4.2
2,098,866	-				+2.5
2,098,894	-				+1.5
2,098,982	-				+2.6
2,099,081	+				+0.2
2,099,084	+				+1.6
2,099,086	+				+2.5
2,099,087	-				+1.2
2,099,105	-				-1.4
2,099,314	-				-0.8
2,099,371	+				-0.9
2,099,412	+				-0.8
2,099,462	+				-0.8
2,099,485	+				+0.4
2,099,489	+				-0.2
2,099,489	+				+0.7
2,099,490	-				+1.7
2,099,636	-		LU632_RS10995	0.19	-0.9
2,099,663	+		LU632_RS10995	0.21	-0.3
2,099,664	-		LU632_RS10995	0.21	-0.5
2,099,664	-		LU632_RS10995	0.21	-0.1
2,099,665	+		LU632_RS10995	0.21	-2.3
2,099,666	-		LU632_RS10995	0.21	-1.3
2,099,666	-		LU632_RS10995	0.21	+1.6
2,099,668	-		LU632_RS10995	0.21	+0.1
2,099,730	+		LU632_RS10995	0.25	-1.1
2,099,730	+		LU632_RS10995	0.25	-2.6
2,099,731	-		LU632_RS10995	0.25	+1.3
2,099,788	+		LU632_RS10995	0.30	-1.1
2,099,998	+		LU632_RS10995	0.45	+0.7
2,099,999	-		LU632_RS10995	0.45	+3.8
2,100,131	-		LU632_RS10995	0.54	+0.7
2,100,500	-		LU632_RS10995	0.80	-1.5
2,100,523	-		LU632_RS10995	0.82	+1.8
2,100,523	-		LU632_RS10995	0.82	-0.5
2,100,784	-				+2.4
2,100,799	+				-0.5
2,100,884	-				+0.3
2,100,964	+				+0.1
2,101,047	+				-1.5
2,101,208	+				-0.1
2,101,301	+				+0.3
2,101,444	+				-1.2
2,101,445	-				+0.2
2,101,445	-				-0.4
2,101,445	-				+0.7
2,101,635	+				-0.4
2,101,712	-		LU632_RS11000	0.11	+1.2