Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10625

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,027,054	+		LU632_RS10615	0.32	+0.9
2,027,055	-		LU632_RS10615	0.32	-1.5
2,027,114	-		LU632_RS10615	0.42	-1.2
2,027,166	+		LU632_RS10615	0.51	+0.1
2,027,167	-		LU632_RS10615	0.51	+1.5
2,027,346	-		LU632_RS10615	0.82	-0.4
2,027,426	+				+0.7
2,027,453	-				-2.7
2,027,457	+				-0.7
2,027,463	+				-0.3
2,027,463	+				+0.8
2,027,464	-				+0.5
2,027,594	-		LU632_RS10620	0.24	+1.7
2,027,657	+		LU632_RS10620	0.37	+0.2
2,027,657	+		LU632_RS10620	0.37	-0.6
2,027,658	-		LU632_RS10620	0.38	+0.4
2,027,658	-		LU632_RS10620	0.38	-0.7
2,027,658	-		LU632_RS10620	0.38	-1.0
2,027,711	-		LU632_RS10620	0.49	+1.6
2,027,711	-		LU632_RS10620	0.49	-0.4
2,027,774	-		LU632_RS10620	0.62	-2.0
2,027,787	+		LU632_RS10620	0.64	+2.2
2,027,822	-		LU632_RS10620	0.72	+1.6
2,027,822	-		LU632_RS10620	0.72	-0.4
2,027,930	-				-0.3
2,027,957	-				-0.4
2,028,492	+		LU632_RS10625	0.84	-0.9
2,028,493	-		LU632_RS10625	0.84	-1.9
2,028,510	-		LU632_RS10625	0.87	-1.4
2,028,664	+		LU632_RS10630	0.20	+1.5
2,028,945	-		LU632_RS10630	0.85	-0.8
2,029,093	-				-1.6
2,029,106	-				-0.7