Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10550

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,014,561	-	fliM	LU632_RS10540	0.70	-1.0
2,014,596	-	fliM	LU632_RS10540	0.74	+0.5
2,014,662	+	fliM	LU632_RS10540	0.80	-1.8
2,014,663	-	fliM	LU632_RS10540	0.80	+1.3
2,014,726	-	fliM	LU632_RS10540	0.87	+0.3
2,014,867	-				+0.1
2,014,951	+	fliL	LU632_RS10545	0.18	+1.1
2,015,075	-	fliL	LU632_RS10545	0.43	-0.9
2,015,109	+	fliL	LU632_RS10545	0.51	-0.5
2,015,109	+	fliL	LU632_RS10545	0.51	-3.6
2,015,109	+	fliL	LU632_RS10545	0.51	+2.2
2,015,109	+	fliL	LU632_RS10545	0.51	+2.6
2,015,109	+	fliL	LU632_RS10545	0.51	-0.9
2,015,110	-	fliL	LU632_RS10545	0.51	-0.6
2,015,276	+	fliL	LU632_RS10545	0.85	-1.0
2,015,276	+	fliL	LU632_RS10545	0.85	-1.9
2,015,276	+	fliL	LU632_RS10545	0.85	+0.5
2,015,280	-	fliL	LU632_RS10545	0.86	-0.9
2,015,282	+	fliL	LU632_RS10545	0.86	-2.9
2,015,314	+				+0.5
2,015,315	-				-0.6
2,015,347	+				-3.2
2,015,357	-				+0.3
2,015,444	+				+1.7
2,015,445	-				+1.6
2,015,512	-				-1.0
2,015,601	+				-0.7
2,015,607	+				-0.9
2,015,607	+				+0.3
2,015,607	+				+0.7
2,015,608	-				-3.0
2,015,608	-				+1.4
2,015,608	-				-0.7
2,015,623	-				+0.8
2,015,731	+		LU632_RS10550	0.17	-1.3
2,015,787	+		LU632_RS10550	0.22	+3.5
2,015,788	-		LU632_RS10550	0.22	-2.1
2,015,854	+		LU632_RS10550	0.27	-0.7
2,015,854	+		LU632_RS10550	0.27	+2.4
2,015,854	+		LU632_RS10550	0.27	+0.6
2,015,854	+		LU632_RS10550	0.27	-0.2
2,015,855	-		LU632_RS10550	0.27	-0.3
2,015,855	-		LU632_RS10550	0.27	+1.0
2,015,855	-		LU632_RS10550	0.27	-2.3
2,016,205	-		LU632_RS10550	0.53	-1.7
2,016,266	-		LU632_RS10550	0.58	-0.7
2,016,374	-		LU632_RS10550	0.66	+0.5
2,016,374	-		LU632_RS10550	0.66	+1.0
2,016,453	+		LU632_RS10550	0.72	+0.4
2,016,454	-		LU632_RS10550	0.72	-1.7
2,016,493	+		LU632_RS10550	0.75	-2.6
2,016,496	+		LU632_RS10550	0.75	-0.4
2,016,526	+		LU632_RS10550	0.77	-0.7
2,016,897	+	fliJ	LU632_RS10555	0.17	+0.6
2,016,897	+	fliJ	LU632_RS10555	0.17	-1.5
2,016,898	-	fliJ	LU632_RS10555	0.17	-0.2
2,017,060	+	fliJ	LU632_RS10555	0.53	+0.6
2,017,061	-	fliJ	LU632_RS10555	0.53	+0.2
2,017,061	-	fliJ	LU632_RS10555	0.53	+1.5
2,017,097	+	fliJ	LU632_RS10555	0.62	-0.3
2,017,097	+	fliJ	LU632_RS10555	0.62	+0.0
2,017,097	+	fliJ	LU632_RS10555	0.62	-0.7
2,017,098	-	fliJ	LU632_RS10555	0.62	-1.6
2,017,098	-	fliJ	LU632_RS10555	0.62	+0.2
2,017,302	+				-0.6
2,017,420	+				+0.6
2,017,420	+				-0.8
2,017,456	+	fliI	LU632_RS10560	0.13	-0.1
2,017,475	+	fliI	LU632_RS10560	0.14	-1.2
2,017,548	-	fliI	LU632_RS10560	0.19	-2.7
2,017,598	+	fliI	LU632_RS10560	0.23	+0.4
2,017,598	+	fliI	LU632_RS10560	0.23	-3.0
2,017,598	+	fliI	LU632_RS10560	0.23	+0.4
2,017,599	-	fliI	LU632_RS10560	0.23	-0.4
2,017,599	-	fliI	LU632_RS10560	0.23	-0.7
2,017,599	-	fliI	LU632_RS10560	0.23	-0.8
2,017,599	-	fliI	LU632_RS10560	0.23	-1.7
2,017,599	-	fliI	LU632_RS10560	0.23	-1.1
2,017,671	-	fliI	LU632_RS10560	0.28	-0.4
2,017,672	+	fliI	LU632_RS10560	0.28	-0.8
2,017,672	+	fliI	LU632_RS10560	0.28	+0.4
2,017,673	-	fliI	LU632_RS10560	0.29	-1.5