Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10485

Experiment: plant=Squash; plant sample=QP1; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnpA and LU632_RS10485 are separated by 110 nucleotidesLU632_RS10485 and LU632_RS10490 are separated by 211 nucleotides LU632_RS10480: tnpA - IS200/IS605 family transposase, at 2,005,048 to 2,005,494 tnpA LU632_RS10485: LU632_RS10485 - IS481 family transposase, at 2,005,605 to 2,006,643 _RS10485 LU632_RS10490: LU632_RS10490 - IS256 family transposase, at 2,006,855 to 2,008,063 _RS10490 Position (kb) 2005 2006 2007Strain fitness (log2 ratio) -1 0 1 2at 2004.709 kb on + strandat 2004.832 kb on + strandat 2005.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA
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2,004,709 + +0.0
2,004,832 + +2.1
2,005,509 - -0.4

Or see this region's nucleotide sequence