Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10305

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,969,480	+				-0.7
1,969,481	-				+0.6
1,969,481	-				-0.5
1,969,481	-				-0.0
1,969,501	+				-0.4
1,969,505	-				-0.3
1,969,533	-				-0.6
1,969,533	-				-1.3
1,969,575	+				+0.2
1,969,576	-				-1.4
1,969,578	+				-0.7
1,969,579	-				+0.0
1,969,579	-				-1.5
1,969,579	-				-0.7
1,969,581	+				-0.7
1,969,651	+		LU632_RS10305	0.12	+1.5
1,969,652	-		LU632_RS10305	0.13	+1.8
1,969,654	+		LU632_RS10305	0.13	+1.1
1,969,945	+		LU632_RS10305	0.64	+0.4
1,969,946	-		LU632_RS10305	0.64	-0.8
1,969,971	+		LU632_RS10305	0.69	+1.6
1,969,997	-		LU632_RS10305	0.73	+0.6
1,969,997	-		LU632_RS10305	0.73	-0.2
1,970,045	+		LU632_RS10305	0.82	-0.4
1,970,045	+		LU632_RS10305	0.82	-0.4
1,970,046	-		LU632_RS10305	0.82	+1.8
1,970,046	-		LU632_RS10305	0.82	-0.2
1,970,073	-		LU632_RS10305	0.86	+0.0
1,970,218	+				-0.5
1,970,445	+		LU632_RS10310	0.47	+0.3
1,970,445	+		LU632_RS10310	0.47	-1.5
1,970,445	+		LU632_RS10310	0.47	-1.5
1,970,446	-		LU632_RS10310	0.47	+0.0
1,970,447	+		LU632_RS10310	0.48	+0.0
1,970,447	+		LU632_RS10310	0.48	-1.5
1,970,447	+		LU632_RS10310	0.48	-0.4
1,970,447	+		LU632_RS10310	0.48	+0.7
1,970,448	-		LU632_RS10310	0.48	+1.5
1,970,459	+		LU632_RS10310	0.50	-0.8
1,970,459	+		LU632_RS10310	0.50	+0.7
1,970,494	-		LU632_RS10310	0.56	-2.6
1,970,547	-		LU632_RS10310	0.66	+1.1
1,970,569	+		LU632_RS10310	0.70	-0.8
1,970,581	+		LU632_RS10310	0.72	+0.4
1,970,582	-		LU632_RS10310	0.72	+1.2
1,970,582	-		LU632_RS10310	0.72	-1.0
1,970,582	-		LU632_RS10310	0.72	+0.0
1,970,616	+		LU632_RS10310	0.78	-0.9
1,970,616	+		LU632_RS10310	0.78	-0.8
1,970,617	-		LU632_RS10310	0.78	-1.4
1,970,661	-		LU632_RS10310	0.86	+0.2
1,970,687	+				-1.1
1,970,690	+				-0.4
1,970,691	-				+0.6
1,970,691	-				-0.7
1,970,693	+				-0.4
1,970,693	+				+1.3
1,970,694	-				-0.8
1,970,703	+				+1.1
1,970,703	+				+2.6
1,970,703	+				+1.1
1,970,703	+				-2.1
1,970,703	+				+0.1
1,970,703	+				+0.4
1,970,703	+				-0.2
1,970,704	-				-1.6
1,970,704	-				+1.0
1,970,801	-				-2.4
1,971,075	-				-1.7
1,971,090	+				-0.3