Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10300

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,967,613	-		LU632_RS10295	0.63	+1.0
1,967,813	+		LU632_RS10295	0.84	-0.3
1,967,879	-				-1.7
1,967,937	-				-0.5
1,968,008	+				+0.6
1,968,011	-				+1.2
1,968,014	+				+0.8
1,968,021	+				-0.0
1,968,052	+				+0.0
1,968,174	+				+2.2
1,968,224	+				-0.9
1,968,250	+				+2.8
1,968,251	-				+1.6
1,968,251	-				+1.6
1,968,264	-				-0.7
1,968,318	+				+0.4
1,968,324	+				+1.6
1,968,343	-				-1.3
1,968,346	+				+0.4
1,968,346	+				+0.4
1,968,347	-				+0.9
1,968,436	+				-1.4
1,968,458	+				+0.9
1,969,480	+				-0.7
1,969,481	-				+0.6
1,969,481	-				-0.5
1,969,481	-				-0.0
1,969,501	+				-0.4
1,969,505	-				-0.3
1,969,533	-				-0.6
1,969,533	-				-1.3
1,969,575	+				+0.2
1,969,576	-				-1.4
1,969,578	+				-0.7
1,969,579	-				+0.0
1,969,579	-				-1.5
1,969,579	-				-0.7
1,969,581	+				-0.7
1,969,651	+		LU632_RS10305	0.12	+1.5
1,969,652	-		LU632_RS10305	0.13	+1.8
1,969,654	+		LU632_RS10305	0.13	+1.1
1,969,945	+		LU632_RS10305	0.64	+0.4
1,969,946	-		LU632_RS10305	0.64	-0.8
1,969,971	+		LU632_RS10305	0.69	+1.6
1,969,997	-		LU632_RS10305	0.73	+0.6
1,969,997	-		LU632_RS10305	0.73	-0.2
1,970,045	+		LU632_RS10305	0.82	-0.4
1,970,045	+		LU632_RS10305	0.82	-0.4
1,970,046	-		LU632_RS10305	0.82	+1.8
1,970,046	-		LU632_RS10305	0.82	-0.2
1,970,073	-		LU632_RS10305	0.86	+0.0
1,970,218	+				-0.5
1,970,445	+		LU632_RS10310	0.47	+0.3
1,970,445	+		LU632_RS10310	0.47	-1.5
1,970,445	+		LU632_RS10310	0.47	-1.5
1,970,446	-		LU632_RS10310	0.47	+0.0
1,970,447	+		LU632_RS10310	0.48	+0.0
1,970,447	+		LU632_RS10310	0.48	-1.5
1,970,447	+		LU632_RS10310	0.48	-0.4
1,970,447	+		LU632_RS10310	0.48	+0.7
1,970,448	-		LU632_RS10310	0.48	+1.5
1,970,459	+		LU632_RS10310	0.50	-0.8
1,970,459	+		LU632_RS10310	0.50	+0.7
1,970,494	-		LU632_RS10310	0.56	-2.6