Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10245

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,957,204	+		LU632_RS10235	0.81	+0.1
1,957,204	+		LU632_RS10235	0.81	-0.9
1,957,273	+		LU632_RS10235	0.84	-1.0
1,957,274	-		LU632_RS10235	0.84	+2.6
1,957,274	-		LU632_RS10235	0.84	-1.5
1,957,274	-		LU632_RS10235	0.84	+1.2
1,957,274	-		LU632_RS10235	0.84	+0.1
1,957,310	-		LU632_RS10235	0.86	-0.4
1,957,317	-		LU632_RS10235	0.86	+1.7
1,957,330	+		LU632_RS10235	0.87	+0.9
1,957,394	-		LU632_RS10235	0.90	-0.7
1,957,394	-		LU632_RS10235	0.90	+1.6
1,957,429	+				+1.6
1,957,430	-				-1.5
1,957,431	+				+1.0
1,957,432	-				+1.3
1,957,432	-				-0.2
1,957,555	+				+0.4
1,957,555	+				+0.1
1,957,556	-				+0.6
1,957,556	-				+0.6
1,957,556	-				-1.3
1,958,146	-				+1.4
1,958,233	+		LU632_RS10245	0.37	-0.7
1,958,233	+		LU632_RS10245	0.37	+0.1
1,958,278	+		LU632_RS10245	0.64	-0.3
1,958,279	-		LU632_RS10245	0.64	+0.4
1,958,279	-		LU632_RS10245	0.64	+0.2
1,958,294	-		LU632_RS10245	0.73	+1.0
1,958,367	+				-0.8
1,958,367	+				+1.1
1,958,372	-				-0.4
1,958,379	-				-0.4
1,958,390	+				-2.3
1,958,441	-				-0.8
1,958,441	-				+0.4
1,958,466	-				-1.9
1,958,492	-				-2.4
1,958,492	-				-0.6
1,958,494	+				+0.8
1,958,495	-				-1.4
1,958,495	-				-0.0
1,958,495	-				-0.2
1,958,553	+				-0.3
1,958,567	-				-0.8
1,958,572	-				+0.0
1,958,582	+				+1.0
1,958,582	+				+0.1
1,958,586	+				-0.4
1,958,587	-				+1.2
1,958,587	-				+0.1
1,958,707	+				+0.1
1,958,733	+				-0.8
1,958,803	+				-0.4
1,958,804	-				+1.1
1,958,804	-				+0.6
1,958,834	+				-1.4
1,958,834	+				+3.3
1,958,941	-		LU632_RS10250	0.36	+1.4
1,959,160	-		LU632_RS10255	0.33	-0.4