Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10170 and LU632_RS10175 are separated by 19 nucleotides LU632_RS10175 and LU632_RS10180 are separated by 172 nucleotides LU632_RS10180 and LU632_RS10185 are separated by 240 nucleotides LU632_RS10185 and uvrY are separated by 285 nucleotides
LU632_RS10170: LU632_RS10170 - autoinducer binding domain-containing protein, at 1,948,066 to 1,948,464
_RS10170
LU632_RS10175: LU632_RS10175 - LuxR C-terminal-related transcriptional regulator, at 1,948,484 to 1,948,636
_RS10175
LU632_RS10180: LU632_RS10180 - autoinducer synthase, at 1,948,809 to 1,949,438
_RS10180
LU632_RS10185: LU632_RS10185 - tail fiber assembly protein, at 1,949,679 to 1,949,855
_RS10185
LU632_RS10190: uvrY - UvrY/SirA/GacA family response regulator transcription factor, at 1,950,141 to 1,950,800
uvrY
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1947.845 kb on + strand at 1947.846 kb on - strand at 1947.868 kb on + strand at 1948.015 kb on + strand at 1948.090 kb on + strand at 1948.091 kb on - strand at 1948.145 kb on - strand, within LU632_RS10170 at 1948.215 kb on + strand, within LU632_RS10170 at 1948.424 kb on + strand, within LU632_RS10170 at 1948.425 kb on - strand at 1948.425 kb on - strand at 1948.426 kb on + strand at 1948.427 kb on - strand at 1948.452 kb on + strand at 1948.491 kb on + strand at 1948.675 kb on + strand at 1948.760 kb on - strand at 1948.804 kb on + strand at 1948.805 kb on - strand at 1948.810 kb on - strand at 1948.817 kb on + strand at 1948.818 kb on - strand at 1948.821 kb on + strand at 1948.838 kb on + strand at 1948.838 kb on + strand at 1948.838 kb on + strand at 1948.944 kb on + strand, within LU632_RS10180 at 1949.212 kb on - strand, within LU632_RS10180 at 1949.317 kb on + strand, within LU632_RS10180 at 1949.317 kb on + strand, within LU632_RS10180 at 1949.547 kb on + strand at 1949.552 kb on + strand at 1949.655 kb on + strand at 1949.657 kb on + strand at 1949.744 kb on + strand, within LU632_RS10185 at 1949.745 kb on - strand, within LU632_RS10185 at 1949.907 kb on - strand at 1949.970 kb on - strand at 1949.974 kb on + strand at 1950.026 kb on + strand at 1950.058 kb on + strand at 1950.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 1,947,845 + +0.6 1,947,846 - +0.8 1,947,868 + +2.1 1,948,015 + -0.8 1,948,090 + -0.5 1,948,091 - -0.7 1,948,145 - LU632_RS10170 0.20 -0.5 1,948,215 + LU632_RS10170 0.37 +0.2 1,948,424 + LU632_RS10170 0.90 -0.1 1,948,425 - +0.6 1,948,425 - +0.4 1,948,426 + +0.6 1,948,427 - -1.2 1,948,452 + -0.4 1,948,491 + -0.5 1,948,675 + -0.7 1,948,760 - +2.1 1,948,804 + +2.2 1,948,805 - +2.1 1,948,810 - +3.3 1,948,817 + +2.6 1,948,818 - +4.2 1,948,821 + +1.4 1,948,838 + +1.1 1,948,838 + +1.5 1,948,838 + +2.4 1,948,944 + LU632_RS10180 0.21 +3.0 1,949,212 - LU632_RS10180 0.64 +4.1 1,949,317 + LU632_RS10180 0.81 +3.6 1,949,317 + LU632_RS10180 0.81 -0.2 1,949,547 + +1.0 1,949,552 + +0.0 1,949,655 + +1.0 1,949,657 + +0.4 1,949,744 + LU632_RS10185 0.37 -0.5 1,949,745 - LU632_RS10185 0.37 +1.6 1,949,907 - -0.6 1,949,970 - -0.4 1,949,974 + -1.9 1,950,026 + -1.3 1,950,058 + -2.1 1,950,096 + -0.0
Or see this region's nucleotide sequence