Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09545

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,805,947	+	moeA	LU632_RS09540	0.23	+2.2
1,805,966	+	moeA	LU632_RS09540	0.25	+0.5
1,805,967	-	moeA	LU632_RS09540	0.25	-0.3
1,806,113	+	moeA	LU632_RS09540	0.37	-0.0
1,806,114	-	moeA	LU632_RS09540	0.37	+0.2
1,806,114	-	moeA	LU632_RS09540	0.37	+0.8
1,806,282	+	moeA	LU632_RS09540	0.51	-0.6
1,806,283	-	moeA	LU632_RS09540	0.51	+0.7
1,806,514	+	moeA	LU632_RS09540	0.69	-0.6
1,806,514	+	moeA	LU632_RS09540	0.69	+1.6
1,806,606	+	moeA	LU632_RS09540	0.77	-1.2
1,806,908	+				-0.3
1,806,918	-				-0.4
1,806,931	-		LU632_RS09545	0.10	+1.4
1,806,944	+		LU632_RS09545	0.19	+0.8
1,806,946	+		LU632_RS09545	0.20	-0.9
1,806,947	-		LU632_RS09545	0.21	-1.9
1,806,949	+		LU632_RS09545	0.22	+1.0
1,807,011	+		LU632_RS09545	0.65	-1.1
1,807,087	-				+1.9
1,807,087	-				-1.2
1,807,100	-				-1.8
1,807,126	+				+0.4
1,807,147	+				-0.8
1,807,148	-				+0.5
1,807,150	-				+0.8
1,807,314	-				+0.5
1,807,315	+				-1.4
1,807,316	-				+0.8
1,807,425	+		LU632_RS09550	0.20	-0.6
1,807,501	+		LU632_RS09550	0.28	-1.9
1,807,714	+		LU632_RS09550	0.50	+0.5
1,807,769	-		LU632_RS09550	0.55	-1.9
1,807,899	-		LU632_RS09550	0.69	-0.3
1,807,899	-		LU632_RS09550	0.69	-0.9
1,807,918	-		LU632_RS09550	0.71	-0.1
1,807,970	+		LU632_RS09550	0.76	+2.0
1,807,971	-		LU632_RS09550	0.76	+1.3
1,807,971	-		LU632_RS09550	0.76	-1.4
1,808,035	-		LU632_RS09550	0.83	-0.8