Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09340

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,768,031	+		LU632_RS09335	0.58	-0.3
1,768,166	+		LU632_RS09335	0.66	+0.1
1,768,167	-		LU632_RS09335	0.66	-1.1
1,768,167	-		LU632_RS09335	0.66	-1.3
1,768,310	+		LU632_RS09335	0.73	-0.8
1,768,310	+		LU632_RS09335	0.73	-1.1
1,768,545	-		LU632_RS09335	0.86	+0.3
1,768,629	-				+1.7
1,768,629	-				-1.0
1,768,664	+				-1.0
1,768,693	+				-0.1
1,768,693	+				-0.5
1,768,856	-				+0.5
1,768,856	-				-0.5
1,768,929	+				-0.9
1,768,929	+				-0.6
1,768,929	+				+2.4
1,769,066	+	idi	LU632_RS09340	0.19	-1.4
1,769,117	+	idi	LU632_RS09340	0.28	+0.1
1,769,117	+	idi	LU632_RS09340	0.28	-0.9
1,769,118	-	idi	LU632_RS09340	0.29	+0.4
1,769,121	+	idi	LU632_RS09340	0.29	-1.5
1,769,121	+	idi	LU632_RS09340	0.29	+1.1
1,769,121	+	idi	LU632_RS09340	0.29	+0.9
1,769,122	-	idi	LU632_RS09340	0.29	+1.8
1,769,122	-	idi	LU632_RS09340	0.29	+0.6
1,769,122	-	idi	LU632_RS09340	0.29	+0.9
1,769,143	+	idi	LU632_RS09340	0.33	-0.9
1,769,187	-	idi	LU632_RS09340	0.41	-0.7
1,769,309	+	idi	LU632_RS09340	0.63	+0.1
1,769,309	+	idi	LU632_RS09340	0.63	+0.3
1,769,417	+	idi	LU632_RS09340	0.82	+0.8
1,769,418	-	idi	LU632_RS09340	0.82	+0.3