Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09280

Experiment: plant=Squash; plant sample=QP1; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS09270 and LU632_RS09275 are separated by 39 nucleotidesLU632_RS09275 and LU632_RS09280 overlap by 10 nucleotidesLU632_RS09280 and LU632_RS09285 are separated by 21 nucleotidesLU632_RS09285 and LU632_RS09290 are separated by 18 nucleotides LU632_RS09270: LU632_RS09270 - DUF3772 domain-containing protein, at 1,749,527 to 1,751,965 _RS09270 LU632_RS09275: LU632_RS09275 - hypothetical protein, at 1,752,005 to 1,752,235 _RS09275 LU632_RS09280: LU632_RS09280 - tautomerase family protein, at 1,752,226 to 1,752,453 _RS09280 LU632_RS09285: LU632_RS09285 - pseudouridine-5'-phosphate glycosidase, at 1,752,475 to 1,753,410 _RS09285 LU632_RS09290: LU632_RS09290 - amino acid adenylation domain-containing protein, at 1,753,429 to 1,757,283 _RS09290 Position (kb) 1752 1753Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1751.312 kb on + strand, within LU632_RS09270at 1751.470 kb on - strand, within LU632_RS09270at 1751.492 kb on - strand, within LU632_RS09270at 1751.591 kb on - strand, within LU632_RS09270at 1751.887 kb on - strandat 1751.989 kb on + strandat 1751.990 kb on - strandat 1752.034 kb on - strand, within LU632_RS09275at 1752.123 kb on + strand, within LU632_RS09275at 1752.158 kb on - strand, within LU632_RS09275at 1752.227 kb on + strandat 1752.227 kb on + strandat 1752.227 kb on + strandat 1752.227 kb on + strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.233 kb on + strandat 1752.234 kb on - strandat 1752.274 kb on - strand, within LU632_RS09280at 1752.274 kb on - strand, within LU632_RS09280at 1752.275 kb on + strand, within LU632_RS09280at 1752.275 kb on + strand, within LU632_RS09280at 1752.275 kb on + strand, within LU632_RS09280at 1752.500 kb on + strandat 1752.542 kb on - strandat 1752.893 kb on + strand, within LU632_RS09285at 1752.894 kb on - strand, within LU632_RS09285at 1752.943 kb on + strand, within LU632_RS09285at 1752.987 kb on + strand, within LU632_RS09285at 1753.119 kb on + strand, within LU632_RS09285at 1753.119 kb on + strand, within LU632_RS09285at 1753.119 kb on + strand, within LU632_RS09285at 1753.120 kb on - strand, within LU632_RS09285at 1753.120 kb on - strand, within LU632_RS09285at 1753.120 kb on - strand, within LU632_RS09285at 1753.120 kb on - strand, within LU632_RS09285at 1753.120 kb on - strand, within LU632_RS09285at 1753.215 kb on + strand, within LU632_RS09285at 1753.383 kb on - strandat 1753.383 kb on - strandat 1753.392 kb on + strandat 1753.393 kb on - strandat 1753.438 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA
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1,751,312 + LU632_RS09270 0.73 -0.9
1,751,470 - LU632_RS09270 0.80 +0.7
1,751,492 - LU632_RS09270 0.81 -0.4
1,751,591 - LU632_RS09270 0.85 -1.0
1,751,887 - -0.1
1,751,989 + +1.3
1,751,990 - +1.7
1,752,034 - LU632_RS09275 0.13 -1.3
1,752,123 + LU632_RS09275 0.51 +3.2
1,752,158 - LU632_RS09275 0.66 +2.1
1,752,227 + +0.3
1,752,227 + +0.5
1,752,227 + +1.5
1,752,227 + -0.3
1,752,228 - -0.1
1,752,228 - +1.1
1,752,228 - -0.7
1,752,228 - +0.4
1,752,228 - -0.4
1,752,228 - -0.7
1,752,228 - +0.6
1,752,233 + +1.3
1,752,234 - +0.5
1,752,274 - LU632_RS09280 0.21 -2.4
1,752,274 - LU632_RS09280 0.21 -0.9
1,752,275 + LU632_RS09280 0.21 +2.0
1,752,275 + LU632_RS09280 0.21 +0.7
1,752,275 + LU632_RS09280 0.21 +1.9
1,752,500 + +1.2
1,752,542 - +0.1
1,752,893 + LU632_RS09285 0.45 +0.7
1,752,894 - LU632_RS09285 0.45 +1.7
1,752,943 + LU632_RS09285 0.50 +0.9
1,752,987 + LU632_RS09285 0.55 +1.0
1,753,119 + LU632_RS09285 0.69 +2.1
1,753,119 + LU632_RS09285 0.69 +0.3
1,753,119 + LU632_RS09285 0.69 +1.2
1,753,120 - LU632_RS09285 0.69 -0.4
1,753,120 - LU632_RS09285 0.69 +0.2
1,753,120 - LU632_RS09285 0.69 -0.7
1,753,120 - LU632_RS09285 0.69 +1.7
1,753,120 - LU632_RS09285 0.69 -0.9
1,753,215 + LU632_RS09285 0.79 +0.7
1,753,383 - +0.8
1,753,383 - -0.0
1,753,392 + -0.2
1,753,393 - -1.1
1,753,438 + -1.8

Or see this region's nucleotide sequence