Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09250

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,745,649	+		LU632_RS09245	0.45	-0.9
1,745,649	+		LU632_RS09245	0.45	-1.3
1,745,649	+		LU632_RS09245	0.45	-1.6
1,745,650	-		LU632_RS09245	0.45	-1.3
1,745,745	+		LU632_RS09245	0.53	-1.5
1,745,748	-		LU632_RS09245	0.53	-2.0
1,745,748	-		LU632_RS09245	0.53	-1.3
1,745,792	+		LU632_RS09245	0.57	-1.6
1,745,792	+		LU632_RS09245	0.57	-2.7
1,745,792	+		LU632_RS09245	0.57	+0.2
1,745,793	-		LU632_RS09245	0.57	+0.1
1,745,793	-		LU632_RS09245	0.57	-0.6
1,745,793	-		LU632_RS09245	0.57	-2.7
1,745,871	+		LU632_RS09245	0.64	-1.1
1,746,054	+		LU632_RS09245	0.79	+1.7
1,746,055	-		LU632_RS09245	0.79	-1.3
1,746,252	-				-0.9
1,746,376	+				-0.7
1,746,378	+				-0.3
1,746,379	-				-0.1
1,746,379	-				-1.0
1,746,379	-				+0.3
1,746,379	-				-1.0
1,746,379	-				-0.9
1,746,429	-				-1.9
1,746,474	+				-0.3
1,746,474	+				-0.2
1,746,637	-		LU632_RS09250	0.38	+0.8
1,746,641	+		LU632_RS09250	0.39	+0.1
1,746,641	+		LU632_RS09250	0.39	+2.1
1,746,642	-		LU632_RS09250	0.40	-1.3
1,746,642	-		LU632_RS09250	0.40	+0.1
1,746,642	-		LU632_RS09250	0.40	-0.5
1,746,642	-		LU632_RS09250	0.40	-0.2
1,746,642	-		LU632_RS09250	0.40	+0.1
1,746,775	+		LU632_RS09250	0.72	+2.0
1,746,776	-		LU632_RS09250	0.73	-2.0
1,746,776	-		LU632_RS09250	0.73	+0.1
1,746,777	+		LU632_RS09250	0.73	+0.6
1,747,006	+		LU632_RS09255	0.24	+1.7
1,747,006	+		LU632_RS09255	0.24	+0.6
1,747,006	+		LU632_RS09255	0.24	-0.9
1,747,007	-		LU632_RS09255	0.24	-0.1
1,747,063	-		LU632_RS09255	0.36	-2.4
1,747,063	-		LU632_RS09255	0.36	+2.1
1,747,064	+		LU632_RS09255	0.36	+0.7
1,747,064	+		LU632_RS09255	0.36	+0.8
1,747,064	+		LU632_RS09255	0.36	+0.4
1,747,064	+		LU632_RS09255	0.36	-0.5
1,747,064	+		LU632_RS09255	0.36	-0.4
1,747,064	+		LU632_RS09255	0.36	-0.1
1,747,065	-		LU632_RS09255	0.36	-1.1
1,747,065	-		LU632_RS09255	0.36	+0.9
1,747,065	-		LU632_RS09255	0.36	-0.9
1,747,065	-		LU632_RS09255	0.36	+1.0
1,747,065	-		LU632_RS09255	0.36	+1.0
1,747,066	+		LU632_RS09255	0.37	+0.5
1,747,066	+		LU632_RS09255	0.37	-2.1
1,747,067	-		LU632_RS09255	0.37	-0.1
1,747,173	+		LU632_RS09255	0.59	+0.2
1,747,288	-		LU632_RS09255	0.84	-0.9
1,747,361	+				-2.0
1,747,361	+				+0.6
1,747,361	+				+1.1
1,747,362	-				-0.9
1,747,362	-				-1.8
1,747,362	-				+1.2
1,747,476	-				+0.6
1,747,490	-				-0.1
1,747,533	+				+0.1
1,747,533	+				+0.2
1,747,580	-				-0.6
1,747,710	+		LU632_RS09260	0.12	+0.7
1,747,710	+		LU632_RS09260	0.12	-1.6
1,747,711	-		LU632_RS09260	0.13	-0.3
1,747,711	-		LU632_RS09260	0.13	+2.0
1,747,721	+		LU632_RS09260	0.14	+2.2
1,747,722	-		LU632_RS09260	0.15	-0.2
1,747,722	-		LU632_RS09260	0.15	+0.0
1,747,722	-		LU632_RS09260	0.15	+1.2
1,747,738	-		LU632_RS09260	0.17	-0.1
1,747,742	-		LU632_RS09260	0.18	-0.6
1,747,860	+		LU632_RS09260	0.38	-1.7
1,747,860	+		LU632_RS09260	0.38	-0.2