Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09210

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,733,830	+		LU632_RS09205	0.61	+0.6
1,733,834	+		LU632_RS09205	0.62	-0.8
1,733,834	+		LU632_RS09205	0.62	+0.1
1,733,835	-		LU632_RS09205	0.62	-0.1
1,733,835	-		LU632_RS09205	0.62	+0.3
1,733,873	+		LU632_RS09205	0.67	+1.4
1,733,874	-		LU632_RS09205	0.68	-0.7
1,733,913	+		LU632_RS09205	0.73	+1.8
1,733,913	+		LU632_RS09205	0.73	+0.4
1,733,913	+		LU632_RS09205	0.73	-2.3
1,733,913	+		LU632_RS09205	0.73	-2.0
1,733,914	-		LU632_RS09205	0.73	+0.7
1,733,914	-		LU632_RS09205	0.73	-1.1
1,733,916	-		LU632_RS09205	0.73	-0.1
1,734,215	+				+0.3
1,734,229	+				-1.3
1,734,231	+				-1.7
1,734,231	+				+1.1
1,734,231	+				-0.9
1,734,231	+				+0.4
1,734,232	-				-0.5
1,734,421	+				-0.3
1,734,421	+				-0.9
1,734,422	-				-0.0
1,734,422	-				-1.5
1,734,431	+				-1.6
1,734,439	+				+2.4
1,734,596	-				+1.1
1,734,616	-				-0.5
1,734,616	-				+4.3
1,734,619	-				-0.3
1,734,619	-				-0.5
1,734,682	-				+1.0
1,734,682	-				+1.1
1,734,828	+				+0.5
1,734,828	+				-0.6
1,734,841	+				-0.3
1,734,842	-				+0.1
1,734,882	+		LU632_RS09210	0.14	+0.5
1,734,883	-		LU632_RS09210	0.14	-0.1
1,734,883	-		LU632_RS09210	0.14	-0.0
1,734,883	-		LU632_RS09210	0.14	+1.7
1,734,883	-		LU632_RS09210	0.14	+0.7
1,734,883	-		LU632_RS09210	0.14	-1.3
1,734,944	+		LU632_RS09210	0.30	+0.8
1,734,944	+		LU632_RS09210	0.30	-0.2
1,734,944	+		LU632_RS09210	0.30	+0.2
1,734,944	+		LU632_RS09210	0.30	-2.4
1,734,945	-		LU632_RS09210	0.30	+0.9
1,734,945	-		LU632_RS09210	0.30	+0.1
1,734,945	-		LU632_RS09210	0.30	+1.6
1,734,953	-		LU632_RS09210	0.32	+0.9
1,734,953	-		LU632_RS09210	0.32	-0.2
1,734,954	+		LU632_RS09210	0.32	-0.3
1,734,954	+		LU632_RS09210	0.32	+0.9
1,734,955	-		LU632_RS09210	0.33	+0.2
1,734,991	+		LU632_RS09210	0.42	+0.6
1,735,055	-		LU632_RS09210	0.59	-0.1
1,735,062	-		LU632_RS09210	0.60	+0.0
1,735,064	+		LU632_RS09210	0.61	-1.6
1,735,065	-		LU632_RS09210	0.61	+0.8
1,735,091	+		LU632_RS09210	0.68	+1.9
1,735,382	-				+0.1
1,735,415	+				-0.1
1,735,416	-				-0.6
1,735,461	-				-1.0
1,735,461	-				+2.6
1,735,476	-				+0.9
1,735,520	+				-1.0
1,735,521	-				+1.1
1,735,581	+				+0.1
1,735,708	+	rhlE	LU632_RS09215	0.13	+0.3
1,735,822	-	rhlE	LU632_RS09215	0.21	-0.3
1,735,846	+	rhlE	LU632_RS09215	0.23	-0.3
1,735,865	+	rhlE	LU632_RS09215	0.24	-1.7
1,735,903	+	rhlE	LU632_RS09215	0.27	-0.2
1,735,904	-	rhlE	LU632_RS09215	0.27	-1.1
1,736,103	-	rhlE	LU632_RS09215	0.41	+0.4
1,736,103	-	rhlE	LU632_RS09215	0.41	+1.2
1,736,130	-	rhlE	LU632_RS09215	0.43	-1.3