Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09165

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,726,944	+	uvrB	LU632_RS09160	0.75	+1.0
1,727,042	-	uvrB	LU632_RS09160	0.80	-0.9
1,727,084	+	uvrB	LU632_RS09160	0.82	+0.2
1,727,085	-	uvrB	LU632_RS09160	0.82	+2.0
1,727,085	-	uvrB	LU632_RS09160	0.82	-0.3
1,727,159	+	uvrB	LU632_RS09160	0.85	-0.9
1,727,160	-	uvrB	LU632_RS09160	0.86	+0.7
1,727,161	+	uvrB	LU632_RS09160	0.86	+0.8
1,727,161	+	uvrB	LU632_RS09160	0.86	-1.5
1,727,162	-	uvrB	LU632_RS09160	0.86	-0.9
1,727,280	+				-0.1
1,727,281	-				-1.3
1,727,309	-				-0.9
1,727,309	-				+0.9
1,727,505	-				-0.3
1,727,509	+				-2.1
1,727,509	+				+1.0
1,727,515	+				-1.3
1,727,515	+				+1.2
1,727,516	-				+0.1
1,727,586	+				+0.9
1,727,586	+				+2.3
1,727,629	+				+2.1
1,727,653	-				+0.4
1,727,792	+				-0.0
1,727,809	-				+1.3
1,727,880	-				-0.3
1,727,926	-				+0.1
1,728,053	+	yvcK	LU632_RS09165	0.13	+1.9
1,728,059	+	yvcK	LU632_RS09165	0.14	-0.8
1,728,060	-	yvcK	LU632_RS09165	0.14	-0.6
1,728,103	+	yvcK	LU632_RS09165	0.19	-0.1
1,728,104	-	yvcK	LU632_RS09165	0.19	-1.1
1,728,116	+	yvcK	LU632_RS09165	0.20	+0.6
1,728,116	+	yvcK	LU632_RS09165	0.20	-0.3
1,728,117	-	yvcK	LU632_RS09165	0.20	-0.1
1,728,117	-	yvcK	LU632_RS09165	0.20	-1.9
1,728,233	+	yvcK	LU632_RS09165	0.33	-1.1
1,728,234	-	yvcK	LU632_RS09165	0.33	-2.2
1,728,258	-	yvcK	LU632_RS09165	0.36	+0.7
1,728,259	+	yvcK	LU632_RS09165	0.36	-0.8
1,728,414	-	yvcK	LU632_RS09165	0.53	-0.7
1,728,537	+	yvcK	LU632_RS09165	0.67	-0.1
1,728,557	+	yvcK	LU632_RS09165	0.69	+1.7
1,728,557	+	yvcK	LU632_RS09165	0.69	+1.0
1,728,558	-	yvcK	LU632_RS09165	0.69	-1.5
1,728,558	-	yvcK	LU632_RS09165	0.69	+1.0
1,728,689	+	yvcK	LU632_RS09165	0.83	-0.9
1,728,689	+	yvcK	LU632_RS09165	0.83	+1.3
1,728,747	+	yvcK	LU632_RS09165	0.90	+0.7
1,728,748	-	yvcK	LU632_RS09165	0.90	-0.3
1,728,840	-				+1.3
1,728,845	+				-1.7
1,728,845	+				-0.1
1,728,845	+				+1.2
1,728,845	+				+1.4
1,728,845	+				-0.1
1,728,845	+				-1.7
1,728,846	-				+3.7
1,728,846	-				-0.1
1,728,846	-				+0.9
1,728,846	-				-2.3
1,728,847	+				+0.3
1,728,895	-				+2.0
1,728,895	-				-1.9
1,728,940	+		LU632_RS09170	0.13	-1.3
1,728,991	+		LU632_RS09170	0.46	-0.5
1,728,994	+		LU632_RS09170	0.48	-0.2
1,728,995	-		LU632_RS09170	0.49	-0.4
1,728,995	-		LU632_RS09170	0.49	+0.4
1,729,098	-				-0.3
1,729,143	+				-0.3
1,729,150	-				-1.1
1,729,168	+				+1.4
1,729,169	-				-0.1
1,729,169	-				-0.3
1,729,171	+				-2.4
1,729,600	-	moaA	LU632_RS09175	0.48	+0.2
1,729,632	+	moaA	LU632_RS09175	0.51	-0.8
1,729,632	+	moaA	LU632_RS09175	0.51	-0.2
1,729,632	+	moaA	LU632_RS09175	0.51	+0.1
1,729,632	+	moaA	LU632_RS09175	0.51	+1.3
1,729,632	+	moaA	LU632_RS09175	0.51	-0.2
1,729,632	+	moaA	LU632_RS09175	0.51	-1.3
1,729,653	+	moaA	LU632_RS09175	0.53	-0.4
1,729,654	-	moaA	LU632_RS09175	0.53	-0.5
1,729,698	+	moaA	LU632_RS09175	0.57	-0.1