Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09085

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS09080 and pgl are separated by 147 nucleotidespgl and LU632_RS09090 are separated by 43 nucleotidesLU632_RS09090 and LU632_RS09095 are separated by 15 nucleotides LU632_RS09080: LU632_RS09080 - pyridoxal phosphatase, at 1,707,883 to 1,708,701 _RS09080 LU632_RS09085: pgl - 6-phosphogluconolactonase, at 1,708,849 to 1,709,844 pgl LU632_RS09090: LU632_RS09090 - kinase inhibitor, at 1,709,888 to 1,710,376 _RS09090 LU632_RS09095: LU632_RS09095 - type 1 glutamine amidotransferase domain-containing protein, at 1,710,392 to 1,711,072 _RS09095 Position (kb) 1708 1709 1710Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1707.899 kb on + strandat 1708.028 kb on + strand, within LU632_RS09080at 1708.028 kb on - strand, within LU632_RS09080at 1708.029 kb on - strand, within LU632_RS09080at 1708.032 kb on + strand, within LU632_RS09080at 1708.177 kb on + strand, within LU632_RS09080at 1708.177 kb on + strand, within LU632_RS09080at 1708.177 kb on + strand, within LU632_RS09080at 1708.177 kb on + strand, within LU632_RS09080at 1708.178 kb on - strand, within LU632_RS09080at 1708.178 kb on - strand, within LU632_RS09080at 1708.178 kb on - strand, within LU632_RS09080at 1708.242 kb on + strand, within LU632_RS09080at 1708.242 kb on + strand, within LU632_RS09080at 1708.329 kb on + strand, within LU632_RS09080at 1708.383 kb on - strand, within LU632_RS09080at 1708.383 kb on - strand, within LU632_RS09080at 1708.582 kb on - strand, within LU632_RS09080at 1708.582 kb on - strand, within LU632_RS09080at 1708.741 kb on + strandat 1708.742 kb on - strandat 1708.827 kb on + strandat 1708.864 kb on + strandat 1708.909 kb on - strandat 1708.999 kb on + strand, within pglat 1709.035 kb on + strand, within pglat 1709.036 kb on - strand, within pglat 1709.038 kb on - strand, within pglat 1709.103 kb on + strand, within pglat 1709.420 kb on - strand, within pglat 1709.420 kb on - strand, within pglat 1709.859 kb on - strandat 1709.907 kb on + strandat 1709.950 kb on + strand, within LU632_RS09090at 1709.953 kb on + strand, within LU632_RS09090at 1709.964 kb on + strand, within LU632_RS09090at 1710.016 kb on - strand, within LU632_RS09090at 1710.028 kb on + strand, within LU632_RS09090at 1710.030 kb on + strand, within LU632_RS09090at 1710.102 kb on - strand, within LU632_RS09090at 1710.176 kb on - strand, within LU632_RS09090at 1710.176 kb on - strand, within LU632_RS09090at 1710.176 kb on - strand, within LU632_RS09090at 1710.180 kb on - strand, within LU632_RS09090at 1710.180 kb on - strand, within LU632_RS09090at 1710.180 kb on - strand, within LU632_RS09090at 1710.364 kb on + strandat 1710.589 kb on + strand, within LU632_RS09095at 1710.590 kb on - strand, within LU632_RS09095at 1710.706 kb on - strand, within LU632_RS09095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA
remove
1,707,899 + -0.3
1,708,028 + LU632_RS09080 0.18 -0.6
1,708,028 - LU632_RS09080 0.18 -1.6
1,708,029 - LU632_RS09080 0.18 -0.9
1,708,032 + LU632_RS09080 0.18 -2.1
1,708,177 + LU632_RS09080 0.36 -1.0
1,708,177 + LU632_RS09080 0.36 -0.6
1,708,177 + LU632_RS09080 0.36 +0.5
1,708,177 + LU632_RS09080 0.36 +0.7
1,708,178 - LU632_RS09080 0.36 -2.2
1,708,178 - LU632_RS09080 0.36 -1.5
1,708,178 - LU632_RS09080 0.36 +0.9
1,708,242 + LU632_RS09080 0.44 -0.6
1,708,242 + LU632_RS09080 0.44 -1.8
1,708,329 + LU632_RS09080 0.54 +0.3
1,708,383 - LU632_RS09080 0.61 -0.8
1,708,383 - LU632_RS09080 0.61 -0.3
1,708,582 - LU632_RS09080 0.85 -0.0
1,708,582 - LU632_RS09080 0.85 +0.7
1,708,741 + -0.5
1,708,742 - -0.0
1,708,827 + -0.5
1,708,864 + -0.3
1,708,909 - +1.1
1,708,999 + pgl LU632_RS09085 0.15 +0.1
1,709,035 + pgl LU632_RS09085 0.19 -0.3
1,709,036 - pgl LU632_RS09085 0.19 -0.6
1,709,038 - pgl LU632_RS09085 0.19 -1.1
1,709,103 + pgl LU632_RS09085 0.26 -0.3
1,709,420 - pgl LU632_RS09085 0.57 -1.9
1,709,420 - pgl LU632_RS09085 0.57 +0.1
1,709,859 - +2.8
1,709,907 + -0.3
1,709,950 + LU632_RS09090 0.13 +2.3
1,709,953 + LU632_RS09090 0.13 +0.7
1,709,964 + LU632_RS09090 0.16 -1.4
1,710,016 - LU632_RS09090 0.26 +0.8
1,710,028 + LU632_RS09090 0.29 -0.2
1,710,030 + LU632_RS09090 0.29 +0.5
1,710,102 - LU632_RS09090 0.44 +0.5
1,710,176 - LU632_RS09090 0.59 +0.7
1,710,176 - LU632_RS09090 0.59 -0.1
1,710,176 - LU632_RS09090 0.59 -0.8
1,710,180 - LU632_RS09090 0.60 +0.0
1,710,180 - LU632_RS09090 0.60 -1.4
1,710,180 - LU632_RS09090 0.60 -0.4
1,710,364 + -1.5
1,710,589 + LU632_RS09095 0.29 +1.5
1,710,590 - LU632_RS09095 0.29 -1.3
1,710,706 - LU632_RS09095 0.46 -0.2

Or see this region's nucleotide sequence