Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08915

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,682,571	-		LU632_RS08905	0.52	-0.6
1,682,592	+		LU632_RS08905	0.58	+2.2
1,682,614	+		LU632_RS08905	0.63	+2.1
1,682,615	-		LU632_RS08905	0.63	+0.0
1,682,615	-		LU632_RS08905	0.63	-1.5
1,682,678	+		LU632_RS08905	0.79	-1.6
1,682,747	+				-1.3
1,682,747	+				-0.7
1,682,748	-				+0.4
1,682,748	-				+0.1
1,682,751	+				+0.6
1,682,779	-				+0.2
1,682,779	-				-2.3
1,682,901	+		LU632_RS08910	0.17	-1.2
1,682,911	+		LU632_RS08910	0.20	-0.7
1,682,911	+		LU632_RS08910	0.20	+1.4
1,682,911	+		LU632_RS08910	0.20	+0.0
1,682,911	+		LU632_RS08910	0.20	+0.8
1,682,911	+		LU632_RS08910	0.20	-2.0
1,682,912	-		LU632_RS08910	0.21	+0.1
1,682,912	-		LU632_RS08910	0.21	+0.5
1,682,912	-		LU632_RS08910	0.21	+2.2
1,683,066	+		LU632_RS08910	0.70	-1.1
1,683,066	+		LU632_RS08910	0.70	+0.5
1,683,079	-		LU632_RS08910	0.74	-1.3
1,683,106	-		LU632_RS08910	0.83	+0.7
1,683,191	-				+0.7
1,683,211	+				-0.2
1,683,212	-				+0.8
1,683,261	+				-0.4
1,683,269	+				-0.0
1,683,313	-				-0.2
1,683,318	-				+3.1
1,683,355	+				+1.1
1,683,385	-				+0.5
1,683,441	+				-1.6
1,683,442	-				-0.9
1,683,448	-				+2.0
1,683,473	+				-1.2
1,683,561	+	hisIE	LU632_RS08915	0.13	-0.9
1,683,562	-	hisIE	LU632_RS08915	0.13	-2.5
1,683,562	-	hisIE	LU632_RS08915	0.13	+0.4
1,683,985	+	hisIE	LU632_RS08915	0.82	-2.8
1,683,985	+	hisIE	LU632_RS08915	0.82	-2.5
1,683,986	-	hisIE	LU632_RS08915	0.82	-0.3
1,683,987	+	hisIE	LU632_RS08915	0.83	-1.3
1,683,987	+	hisIE	LU632_RS08915	0.83	-2.2
1,683,988	-	hisIE	LU632_RS08915	0.83	-2.7
1,684,042	+				-3.0
1,684,043	-				-1.7
1,684,146	+				-0.9
1,684,146	+				-2.1
1,684,146	+				-0.8
1,684,149	+				-0.7
1,684,263	+	hisF	LU632_RS08920	0.23	-3.7
1,684,263	+	hisF	LU632_RS08920	0.23	-0.3
1,684,263	+	hisF	LU632_RS08920	0.23	+0.7
1,684,264	-	hisF	LU632_RS08920	0.23	-1.9
1,684,332	+	hisF	LU632_RS08920	0.32	-2.7
1,684,332	+	hisF	LU632_RS08920	0.32	-1.8
1,684,336	-	hisF	LU632_RS08920	0.32	-1.4
1,684,431	-	hisF	LU632_RS08920	0.44	-2.0
1,684,445	+	hisF	LU632_RS08920	0.46	-2.7
1,684,466	+	hisF	LU632_RS08920	0.49	-4.1
1,684,466	+	hisF	LU632_RS08920	0.49	-1.5
1,684,467	-	hisF	LU632_RS08920	0.49	+0.3
1,684,589	-	hisF	LU632_RS08920	0.65	-1.2
1,684,589	-	hisF	LU632_RS08920	0.65	+0.3
1,684,589	-	hisF	LU632_RS08920	0.65	+0.1
1,684,801	+				-1.5
1,684,866	+				-0.9
1,684,866	+				-0.9
1,684,866	+				+0.1