Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08850

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,670,242	+		LU632_RS08845	0.87	-0.9
1,670,243	-		LU632_RS08845	0.87	-1.5
1,670,243	-		LU632_RS08845	0.87	-1.8
1,670,422	+				+1.0
1,670,548	+				+0.7
1,670,549	-				-3.4
1,670,550	+				-0.4
1,670,550	+				-0.2
1,670,550	+				-0.9
1,670,551	-				+0.9
1,670,551	-				+0.2
1,670,681	+				+2.5
1,670,681	+				+0.2
1,670,733	+				-1.7
1,670,733	+				+0.2
1,670,803	+				+1.1
1,670,848	-				+0.4
1,670,895	+				+1.5
1,670,940	+				+0.2
1,670,941	-				-1.9
1,670,941	-				-0.2
1,670,956	+				-0.2
1,670,956	+				+0.9
1,670,957	-				-0.4
1,670,958	+				+1.7
1,670,961	-				-0.3
1,670,986	+				+0.3
1,671,112	+				+0.6
1,671,113	-				+1.1
1,671,231	+				-1.7
1,671,231	+				-1.5
1,671,231	+				-2.4
1,671,402	+	rfbB	LU632_RS08850	0.21	-0.9
1,671,402	+	rfbB	LU632_RS08850	0.21	-0.7
1,671,650	-	rfbB	LU632_RS08850	0.44	-1.3
1,671,724	-	rfbB	LU632_RS08850	0.51	+0.7
1,671,805	-	rfbB	LU632_RS08850	0.58	+1.7
1,671,898	+	rfbB	LU632_RS08850	0.67	+0.7
1,672,042	-	rfbB	LU632_RS08850	0.80	+0.7
1,672,049	+	rfbB	LU632_RS08850	0.81	-1.3
1,672,050	-	rfbB	LU632_RS08850	0.81	-1.3
1,672,148	+				+0.7
1,672,214	-				-0.7
1,672,493	+	rfbD	LU632_RS08855	0.27	-0.3
1,672,497	-	rfbD	LU632_RS08855	0.27	-0.8
1,672,497	-	rfbD	LU632_RS08855	0.27	-0.3
1,672,569	+	rfbD	LU632_RS08855	0.35	-0.1
1,672,570	-	rfbD	LU632_RS08855	0.36	-1.2
1,672,676	+	rfbD	LU632_RS08855	0.48	-1.7
1,672,683	-	rfbD	LU632_RS08855	0.48	-1.7
1,672,716	+	rfbD	LU632_RS08855	0.52	-1.0
1,672,716	+	rfbD	LU632_RS08855	0.52	-1.5
1,672,787	+	rfbD	LU632_RS08855	0.60	-2.7
1,672,790	-	rfbD	LU632_RS08855	0.60	+1.2
1,672,790	-	rfbD	LU632_RS08855	0.60	-2.0
1,672,939	-	rfbD	LU632_RS08855	0.77	-0.6
1,672,943	+	rfbD	LU632_RS08855	0.78	-0.8
1,672,946	+	rfbD	LU632_RS08855	0.78	+0.1
1,672,947	-	rfbD	LU632_RS08855	0.78	-0.1
1,673,055	-				+1.4
1,673,055	-				-0.5
1,673,055	-				-0.6
1,673,057	+				-1.7
1,673,058	-				-1.6
1,673,058	-				-0.7
1,673,132	-				-0.9
1,673,139	+				-1.9
1,673,156	+				+0.2
1,673,160	+				-0.2
1,673,161	-				-0.5
1,673,161	-				-1.3
1,673,180	+				-0.5
1,673,189	-				-2.3
1,673,206	+				+1.7
1,673,206	+				+0.2
1,673,206	+				+0.4