Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08835

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,664,721	+	galE	LU632_RS08830	0.76	-1.9
1,664,722	-	galE	LU632_RS08830	0.76	-0.6
1,664,723	+	galE	LU632_RS08830	0.77	-1.0
1,664,876	+				-4.3
1,664,877	-				-2.4
1,664,954	+				+1.1
1,664,955	-				-1.2
1,664,955	-				-2.0
1,664,958	+				-1.3
1,664,959	-				-0.9
1,665,077	+				-0.3
1,665,129	-				-2.1
1,665,152	+				-0.9
1,665,153	-				+0.1
1,665,153	-				+0.7
1,665,454	-				-0.1
1,665,455	+				-1.9
1,665,577	-				-0.5
1,666,498	+				-0.4
1,666,541	-		LU632_RS08840	0.12	+0.4
1,666,542	+		LU632_RS08840	0.12	-0.0
1,666,543	-		LU632_RS08840	0.12	-0.8
1,666,543	-		LU632_RS08840	0.12	-1.3
1,666,543	-		LU632_RS08840	0.12	+0.2
1,666,641	+		LU632_RS08840	0.37	+2.0
1,666,642	-		LU632_RS08840	0.37	-0.2
1,666,645	-		LU632_RS08840	0.38	-0.7
1,666,728	+		LU632_RS08840	0.58	-0.3
1,666,909	+				+1.9
1,666,956	-				-0.5
1,667,190	+				+0.1
1,667,426	-				+1.1
1,667,457	+				-1.9