Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08735

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,639,747	+				-0.7
1,639,780	+				+1.1
1,639,818	-				+0.9
1,639,967	+		LU632_RS08730	0.54	+0.3
1,639,987	-		LU632_RS08730	0.60	+0.7
1,639,991	+		LU632_RS08730	0.62	+2.3
1,639,991	+		LU632_RS08730	0.62	-0.3
1,639,991	+		LU632_RS08730	0.62	+2.5
1,639,991	+		LU632_RS08730	0.62	+0.1
1,639,991	+		LU632_RS08730	0.62	+0.7
1,639,992	-		LU632_RS08730	0.62	+0.7
1,639,992	-		LU632_RS08730	0.62	+1.8
1,639,995	-		LU632_RS08730	0.63	-0.3
1,639,995	-		LU632_RS08730	0.63	+0.1
1,640,071	+		LU632_RS08730	0.88	-0.3
1,640,109	-				+0.3
1,640,119	-				+1.1
1,640,149	+				+1.1
1,640,149	+				+0.1
1,640,149	+				+0.0
1,640,150	-				-0.9
1,640,334	-				+0.9
1,640,335	-				-1.7
1,640,357	+				+0.8
1,640,486	-				-0.9
1,640,520	+				+0.2
1,640,527	+				-1.6
1,640,527	+				+0.5
1,640,528	-				+0.1
1,640,528	-				+0.4
1,640,528	-				+0.6
1,640,530	+				-1.6
1,640,627	-				-0.9
1,640,644	-				+0.7
1,640,682	+				-1.0
1,640,683	-				+0.7
1,640,706	-				-0.7
1,640,715	+				-0.3
1,640,718	+				+3.1
1,640,718	+				-0.9
1,640,719	-				+0.5
1,640,719	-				-0.3
1,640,763	+				-3.3
1,640,764	-				+1.4
1,640,946	-		LU632_RS08735	0.36	+1.9
1,640,980	-		LU632_RS08735	0.42	-1.9
1,640,998	+		LU632_RS08735	0.45	-1.6
1,640,999	-		LU632_RS08735	0.45	-0.9
1,641,043	+		LU632_RS08735	0.52	-1.6
1,641,043	+		LU632_RS08735	0.52	-1.4
1,641,043	+		LU632_RS08735	0.52	+1.6
1,641,044	-		LU632_RS08735	0.53	-0.7
1,641,044	-		LU632_RS08735	0.53	-1.3
1,641,048	+		LU632_RS08735	0.53	-0.2
1,641,048	+		LU632_RS08735	0.53	+0.4
1,641,156	-		LU632_RS08735	0.71	+0.3
1,641,190	-		LU632_RS08735	0.77	+0.6
1,641,317	+				+0.3
1,641,318	-				-0.3
1,641,318	-				+0.3
1,641,351	-				+0.2
1,641,398	+				-2.0
1,641,398	+				-0.8
1,641,399	-				-2.3
1,641,426	+				-1.5
1,641,447	+				+0.3
1,641,447	+				-0.3
1,641,448	-				-2.0
1,641,483	+				+3.4
1,641,572	+				+2.2
1,641,581	+				+0.7
1,641,581	+				-1.7
1,641,604	+				-0.3
1,641,604	+				+2.4
1,641,608	+				-0.0
1,641,608	+				+0.6
1,641,717	+	udk	LU632_RS08740	0.22	+0.9
1,641,720	+	udk	LU632_RS08740	0.23	-0.3
1,641,764	+	udk	LU632_RS08740	0.30	+0.7
1,641,855	+	udk	LU632_RS08740	0.44	+1.5
1,641,855	+	udk	LU632_RS08740	0.44	+1.1
1,641,855	+	udk	LU632_RS08740	0.44	-0.8
1,641,855	+	udk	LU632_RS08740	0.44	+2.9
1,642,019	+	udk	LU632_RS08740	0.69	-0.3
1,642,121	+	udk	LU632_RS08740	0.85	+0.4
1,642,121	+	udk	LU632_RS08740	0.85	+0.2
1,642,128	+	udk	LU632_RS08740	0.86	-0.9
1,642,128	+	udk	LU632_RS08740	0.86	-0.6
1,642,139	+	udk	LU632_RS08740	0.88	+1.0
1,642,139	+	udk	LU632_RS08740	0.88	-0.8
1,642,236	+				+1.2