Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08290

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,557,402	-				+0.1
1,557,406	-				+2.2
1,557,406	-				+0.7
1,557,406	-				-1.4
1,557,433	+				-0.3
1,557,434	+				-2.3
1,557,495	-				+0.1
1,557,515	+				-1.5
1,557,516	-				-0.4
1,557,761	+	upp	LU632_RS08280	0.45	-0.9
1,557,761	+	upp	LU632_RS08280	0.45	+0.7
1,557,762	-	upp	LU632_RS08280	0.45	-1.9
1,557,899	+	upp	LU632_RS08280	0.67	+1.2
1,558,012	-	upp	LU632_RS08280	0.85	+1.4
1,558,101	+				+0.2
1,558,107	+				-0.1
1,558,107	+				-0.3
1,558,108	-				-2.6
1,558,191	-		LU632_RS08285	0.56	+1.2
1,558,191	-		LU632_RS08285	0.56	+1.9
1,558,257	-				-1.5
1,558,257	-				+0.9
1,558,268	-				-1.5
1,558,303	+				+1.7
1,558,316	-				-0.0
1,558,392	+				-0.7
1,558,496	-	uraA	LU632_RS08290	0.14	+0.5
1,558,578	-	uraA	LU632_RS08290	0.20	-0.5
1,558,864	+	uraA	LU632_RS08290	0.43	+1.3
1,558,865	-	uraA	LU632_RS08290	0.43	+0.1
1,558,897	+	uraA	LU632_RS08290	0.45	-0.9
1,558,897	+	uraA	LU632_RS08290	0.45	+0.8
1,558,897	+	uraA	LU632_RS08290	0.45	-1.3
1,558,897	+	uraA	LU632_RS08290	0.45	+2.6
1,558,897	+	uraA	LU632_RS08290	0.45	-1.4
1,558,897	+	uraA	LU632_RS08290	0.45	-0.3
1,558,897	+	uraA	LU632_RS08290	0.45	-1.3
1,558,897	+	uraA	LU632_RS08290	0.45	+0.9
1,558,897	+	uraA	LU632_RS08290	0.45	-2.0
1,558,897	+	uraA	LU632_RS08290	0.45	-0.2
1,558,897	+	uraA	LU632_RS08290	0.45	-0.8
1,558,897	+	uraA	LU632_RS08290	0.45	-0.4
1,558,898	-	uraA	LU632_RS08290	0.45	-0.7
1,558,898	-	uraA	LU632_RS08290	0.45	+0.9
1,558,898	-	uraA	LU632_RS08290	0.45	+1.6
1,558,898	-	uraA	LU632_RS08290	0.45	-0.6
1,558,898	-	uraA	LU632_RS08290	0.45	-1.3
1,558,898	-	uraA	LU632_RS08290	0.45	+2.7
1,558,898	-	uraA	LU632_RS08290	0.45	-1.3
1,558,974	-	uraA	LU632_RS08290	0.51	-0.3
1,559,073	+	uraA	LU632_RS08290	0.59	+1.0
1,559,074	-	uraA	LU632_RS08290	0.59	-0.2
1,559,142	+	uraA	LU632_RS08290	0.64	-1.9
1,559,180	+	uraA	LU632_RS08290	0.67	-1.0
1,559,181	-	uraA	LU632_RS08290	0.67	-0.3
1,559,220	-	uraA	LU632_RS08290	0.71	-1.1
1,559,294	-	uraA	LU632_RS08290	0.76	-1.7
1,559,343	-	uraA	LU632_RS08290	0.80	-0.5
1,559,440	+	uraA	LU632_RS08290	0.88	+0.5
1,559,463	+	uraA	LU632_RS08290	0.90	-1.4
1,559,463	+	uraA	LU632_RS08290	0.90	-1.6
1,559,463	+	uraA	LU632_RS08290	0.90	+0.4
1,559,463	+	uraA	LU632_RS08290	0.90	-1.3
1,559,464	-	uraA	LU632_RS08290	0.90	+1.1
1,559,464	-	uraA	LU632_RS08290	0.90	+1.5
1,559,464	-	uraA	LU632_RS08290	0.90	-1.3
1,559,464	-	uraA	LU632_RS08290	0.90	+0.5
1,559,464	-	uraA	LU632_RS08290	0.90	+0.2
1,559,464	-	uraA	LU632_RS08290	0.90	-0.7
1,559,464	-	uraA	LU632_RS08290	0.90	+1.1
1,559,467	+	uraA	LU632_RS08290	0.90	-1.6
1,559,467	+	uraA	LU632_RS08290	0.90	-0.2
1,559,467	+	uraA	LU632_RS08290	0.90	-0.6
1,559,467	+	uraA	LU632_RS08290	0.90	+0.4
1,559,468	-	uraA	LU632_RS08290	0.90	-0.9
1,559,468	-	uraA	LU632_RS08290	0.90	-2.2
1,559,468	-	uraA	LU632_RS08290	0.90	-0.6
1,559,468	-	uraA	LU632_RS08290	0.90	-0.3
1,559,468	-	uraA	LU632_RS08290	0.90	+0.4
1,559,511	+				-1.8
1,559,780	+				-0.4
1,560,311	-				-0.6
1,560,406	+				+2.7