Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08240

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,549,500	+				+3.0
1,549,504	+				+0.0
1,549,504	+				+1.7
1,549,518	-				+0.7
1,549,610	-		LU632_RS08230	0.36	-1.0
1,549,610	-		LU632_RS08230	0.36	-0.1
1,549,612	-		LU632_RS08230	0.37	+2.3
1,549,634	+		LU632_RS08230	0.44	-0.3
1,549,720	+		LU632_RS08230	0.70	+0.6
1,549,829	-				+0.2
1,549,848	-				+0.9
1,549,967	-				+1.5
1,550,353	+				+0.6
1,550,354	-				+0.1
1,550,354	-				-0.4
1,550,354	-				+1.4
1,550,425	+				+1.8
1,550,566	+		LU632_RS08240	0.44	-0.3
1,550,571	+		LU632_RS08240	0.47	-1.9
1,550,571	+		LU632_RS08240	0.47	-1.0
1,550,572	-		LU632_RS08240	0.48	-0.6
1,550,615	-		LU632_RS08240	0.73	-1.2
1,550,669	+				-1.4
1,550,670	-				-1.3
1,550,729	-				-0.4
1,550,771	-				+0.4
1,550,862	+		LU632_RS08245	0.29	-0.1
1,550,863	-		LU632_RS08245	0.29	+2.0
1,550,897	+		LU632_RS08245	0.43	+0.4
1,550,931	-		LU632_RS08245	0.56	+0.1
1,550,933	+		LU632_RS08245	0.57	-1.3
1,550,934	-		LU632_RS08245	0.57	+1.1
1,550,958	+		LU632_RS08245	0.67	+0.1
1,551,085	-	tehB	LU632_RS08250	0.15	-0.3
1,551,094	-	tehB	LU632_RS08250	0.17	+0.4
1,551,122	+	tehB	LU632_RS08250	0.21	+2.1
1,551,150	+	tehB	LU632_RS08250	0.26	+0.1
1,551,212	+	tehB	LU632_RS08250	0.36	-0.1
1,551,312	-	tehB	LU632_RS08250	0.53	+1.4
1,551,418	-	tehB	LU632_RS08250	0.70	+0.3
1,551,459	-	tehB	LU632_RS08250	0.77	-1.6
1,551,511	+	tehB	LU632_RS08250	0.86	+1.7