Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08195

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,543,208	-	apbE	LU632_RS08190	0.29	+0.7
1,543,259	-	apbE	LU632_RS08190	0.34	-0.3
1,543,315	-	apbE	LU632_RS08190	0.40	+0.7
1,543,374	+	apbE	LU632_RS08190	0.45	+1.7
1,543,550	-	apbE	LU632_RS08190	0.62	+0.7
1,543,674	-	apbE	LU632_RS08190	0.74	-0.3
1,543,735	-	apbE	LU632_RS08190	0.80	+0.1
1,543,941	-				-0.6
1,543,963	+				+0.4
1,543,964	-				-0.9
1,543,978	+				+0.6
1,544,112	+	alkB	LU632_RS08195	0.23	+0.7
1,544,305	+	alkB	LU632_RS08195	0.53	+0.7
1,544,306	-	alkB	LU632_RS08195	0.53	-0.1
1,544,306	-	alkB	LU632_RS08195	0.53	-0.6
1,544,333	-	alkB	LU632_RS08195	0.57	+0.1
1,544,347	-	alkB	LU632_RS08195	0.59	-0.3
1,544,421	-	alkB	LU632_RS08195	0.71	-0.9
1,544,421	-	alkB	LU632_RS08195	0.71	-1.8
1,544,442	-	alkB	LU632_RS08195	0.74	+1.9
1,544,485	-	alkB	LU632_RS08195	0.81	-0.9
1,544,513	+	alkB	LU632_RS08195	0.85	-0.2
1,544,578	-				+0.5
1,544,633	+				+0.1
1,544,735	+				-0.6
1,544,735	+				-2.8
1,544,736	-				+0.5
1,544,736	-				-1.7
1,544,807	-				+0.9
1,544,814	-				-2.4
1,544,834	+				-1.6
1,544,834	+				-3.6
1,544,835	-				+0.0
1,544,855	+				+0.4
1,544,855	+				-1.5
1,544,881	+				+0.3
1,544,881	+				+1.7
1,544,913	+				-1.3
1,544,935	+				+0.8
1,544,935	+				-0.1
1,545,007	+				+0.2
1,545,008	-				+0.6
1,545,227	+		LU632_RS08200	0.35	-0.6
1,545,228	-		LU632_RS08200	0.35	+1.5
1,545,228	-		LU632_RS08200	0.35	+1.1
1,545,228	-		LU632_RS08200	0.35	-0.4
1,545,228	-		LU632_RS08200	0.35	+0.9
1,545,289	+		LU632_RS08200	0.43	-0.1
1,545,290	-		LU632_RS08200	0.43	-0.3
1,545,365	-		LU632_RS08200	0.53	-0.1
1,545,473	+		LU632_RS08200	0.66	-1.9
1,545,578	+		LU632_RS08200	0.80	-0.9