Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08045

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,508,258	+		LU632_RS08035	0.66	-2.6
1,508,259	-		LU632_RS08035	0.66	-1.1
1,508,259	-		LU632_RS08035	0.66	-1.5
1,508,259	-		LU632_RS08035	0.66	-1.8
1,508,408	+		LU632_RS08035	0.75	-1.2
1,508,409	-		LU632_RS08035	0.75	-3.6
1,508,409	-		LU632_RS08035	0.75	-1.2
1,508,409	-		LU632_RS08035	0.75	-0.6
1,508,409	-		LU632_RS08035	0.75	+0.4
1,508,515	+		LU632_RS08035	0.81	-1.1
1,508,516	-		LU632_RS08035	0.82	-0.3
1,508,542	-		LU632_RS08035	0.83	-0.3
1,508,568	-		LU632_RS08035	0.85	-1.1
1,508,582	+		LU632_RS08035	0.86	-0.4
1,508,803	-				-0.6
1,508,856	-				-0.9
1,508,900	-				+1.8
1,508,940	-				-0.6
1,508,955	-				-0.9
1,508,961	-				+0.6
1,509,246	+		LU632_RS08040	0.85	-1.3
1,509,246	+		LU632_RS08040	0.85	+0.2
1,509,299	+		LU632_RS08045	0.16	+1.3
1,509,402	-		LU632_RS08045	0.49	+2.0
1,509,402	-		LU632_RS08045	0.49	+1.2
1,509,594	-				-0.9
1,509,598	+				+0.3
1,509,598	+				+1.8
1,509,604	-				-2.5
1,509,696	+				+1.9
1,509,706	-				-1.6
1,509,750	+				-1.2
1,509,751	-				-0.8
1,509,756	-				-2.2
1,509,769	-				-2.5
1,509,788	+				-0.4
1,509,808	-				-0.8
1,509,837	-				+0.6
1,509,948	-		LU632_RS08050	0.13	+0.2
1,509,995	-		LU632_RS08050	0.23	-0.7
1,510,023	+		LU632_RS08050	0.28	+0.5
1,510,167	+		LU632_RS08050	0.58	-1.6
1,510,167	+		LU632_RS08050	0.58	+0.3
1,510,201	+		LU632_RS08050	0.64	+0.4
1,510,423	-				-2.1
1,510,455	+				-1.3
1,510,456	-				+1.7
1,510,471	+				+0.1