Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07955

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,486,726	+				-0.4
1,486,780	+				-0.6
1,486,783	+				-1.3
1,486,783	+				+0.4
1,486,784	-				+1.0
1,486,784	-				-0.2
1,486,788	+				+0.6
1,486,789	-				+1.3
1,486,909	+				-1.2
1,486,911	+				+0.0
1,486,911	+				-1.7
1,486,912	-				+0.7
1,486,926	+				-1.4
1,487,254	+	yfbR	LU632_RS07950	0.58	-1.8
1,487,254	+	yfbR	LU632_RS07950	0.58	-1.0
1,487,287	-	yfbR	LU632_RS07950	0.63	+0.2
1,487,305	+	yfbR	LU632_RS07950	0.66	-0.0
1,487,305	+	yfbR	LU632_RS07950	0.66	+1.9
1,487,305	+	yfbR	LU632_RS07950	0.66	-1.2
1,487,315	+	yfbR	LU632_RS07950	0.68	-1.1
1,487,315	+	yfbR	LU632_RS07950	0.68	-0.6
1,487,401	-	yfbR	LU632_RS07950	0.83	-0.4
1,487,460	-				-0.7
1,487,505	-				-1.2
1,487,537	+				-0.9
1,487,537	+				-0.1
1,487,602	-				-1.0
1,487,733	+				-1.8
1,487,734	-				-0.4
1,487,734	-				-1.9
1,487,809	-		LU632_RS07955	0.15	+0.5
1,487,841	+		LU632_RS07955	0.18	-2.6
1,487,841	+		LU632_RS07955	0.18	+1.0
1,487,841	+		LU632_RS07955	0.18	-2.0
1,487,841	+		LU632_RS07955	0.18	-1.0
1,487,841	+		LU632_RS07955	0.18	-1.4
1,487,842	-		LU632_RS07955	0.18	-2.5
1,487,842	-		LU632_RS07955	0.18	+1.0
1,487,842	-		LU632_RS07955	0.18	+0.6
1,487,842	-		LU632_RS07955	0.18	-2.1
1,487,842	-		LU632_RS07955	0.18	+0.3
1,487,842	-		LU632_RS07955	0.18	-2.0
1,487,842	-		LU632_RS07955	0.18	-3.1
1,487,842	-		LU632_RS07955	0.18	-0.0
1,487,843	+		LU632_RS07955	0.18	-1.7
1,487,843	+		LU632_RS07955	0.18	-2.2
1,487,843	+		LU632_RS07955	0.18	-2.2
1,487,843	+		LU632_RS07955	0.18	-0.1
1,487,921	+		LU632_RS07955	0.24	-1.0
1,487,922	-		LU632_RS07955	0.24	-1.9
1,488,058	-		LU632_RS07955	0.36	-0.7
1,488,241	-		LU632_RS07955	0.51	-0.6
1,488,262	+		LU632_RS07955	0.52	-0.2
1,488,262	+		LU632_RS07955	0.52	+0.0
1,488,288	-		LU632_RS07955	0.54	-0.4
1,488,288	-		LU632_RS07955	0.54	-1.6
1,488,288	-		LU632_RS07955	0.54	-1.4
1,488,288	-		LU632_RS07955	0.54	-1.7
1,488,361	-		LU632_RS07955	0.60	+1.6
1,488,404	+		LU632_RS07955	0.64	-1.8
1,488,404	+		LU632_RS07955	0.64	-0.7
1,488,405	-		LU632_RS07955	0.64	-0.5
1,488,405	-		LU632_RS07955	0.64	-2.4
1,488,405	-		LU632_RS07955	0.64	-0.7
1,488,409	+		LU632_RS07955	0.64	-0.7
1,488,410	-		LU632_RS07955	0.65	-4.1
1,488,519	+		LU632_RS07955	0.73	-2.3
1,488,519	+		LU632_RS07955	0.73	-2.5
1,488,519	+		LU632_RS07955	0.73	-1.5
1,488,519	+		LU632_RS07955	0.73	-1.8
1,488,520	-		LU632_RS07955	0.74	-1.3
1,488,520	-		LU632_RS07955	0.74	-1.2
1,488,520	-		LU632_RS07955	0.74	-0.3
1,488,529	+		LU632_RS07955	0.74	-1.8
1,488,546	-		LU632_RS07955	0.76	-0.7
1,488,546	-		LU632_RS07955	0.76	-0.0
1,488,742	-				-0.9
1,488,797	+				+0.6
1,488,798	-				-1.8
1,488,798	-				+0.4
1,488,829	-				-0.8
1,488,897	+				-2.0
1,488,898	-				-1.4
1,488,898	-				-0.8
1,488,898	-				-2.2
1,488,938	+				+3.6
1,488,986	-				+0.0
1,489,066	+				+2.0
1,489,163	+				+0.7
1,489,163	+				-2.3
1,489,164	-				-0.2
1,489,205	+				-0.0
1,489,264	+				-1.7
1,489,400	+				-0.4
1,489,413	+				+1.4
1,489,485	+				+0.5
1,489,492	+				-0.8
1,489,494	+				+1.7
1,489,494	+				+0.2
1,489,573	+				+0.5
1,489,674	+				-0.7