Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07155

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,354,355	+		LU632_RS07145	0.72	+1.4
1,354,423	-		LU632_RS07145	0.76	+0.0
1,354,423	-		LU632_RS07145	0.76	+3.0
1,354,423	-		LU632_RS07145	0.76	-0.5
1,354,560	+		LU632_RS07145	0.84	+4.5
1,354,560	+		LU632_RS07145	0.84	+2.4
1,354,561	-		LU632_RS07145	0.84	+1.4
1,354,561	-		LU632_RS07145	0.84	+0.1
1,354,563	-		LU632_RS07145	0.84	-0.9
1,354,676	+				-1.8
1,354,696	+				+1.2
1,354,800	-				+0.6
1,354,818	+				-0.9
1,354,828	+				-2.2
1,354,919	-		LU632_RS07150	0.16	+0.6
1,354,927	+		LU632_RS07150	0.18	-0.1
1,354,927	+		LU632_RS07150	0.18	+0.3
1,354,927	+		LU632_RS07150	0.18	-0.3
1,354,927	+		LU632_RS07150	0.18	-1.5
1,354,927	+		LU632_RS07150	0.18	-0.3
1,354,928	-		LU632_RS07150	0.18	+0.5
1,354,928	-		LU632_RS07150	0.18	+0.5
1,354,928	-		LU632_RS07150	0.18	-2.3
1,354,928	-		LU632_RS07150	0.18	+2.0
1,354,960	-		LU632_RS07150	0.24	+1.3
1,355,035	-		LU632_RS07150	0.40	-0.9
1,355,035	-		LU632_RS07150	0.40	+1.9
1,355,035	-		LU632_RS07150	0.40	-0.8
1,355,035	-		LU632_RS07150	0.40	+4.5
1,355,077	+		LU632_RS07150	0.48	-1.2
1,355,077	+		LU632_RS07150	0.48	+0.5
1,355,077	+		LU632_RS07150	0.48	+0.4
1,355,077	+		LU632_RS07150	0.48	-1.4
1,355,077	+		LU632_RS07150	0.48	+1.0
1,355,078	-		LU632_RS07150	0.48	+5.4
1,355,078	-		LU632_RS07150	0.48	-1.1
1,355,078	-		LU632_RS07150	0.48	-0.5
1,355,321	+				-1.2
1,355,374	+		LU632_RS07155	0.10	-1.1
1,355,374	+		LU632_RS07155	0.10	-1.2
1,355,421	+		LU632_RS07155	0.22	+0.7
1,355,421	+		LU632_RS07155	0.22	-1.6
1,355,424	+		LU632_RS07155	0.23	+0.7
1,355,424	+		LU632_RS07155	0.23	-0.3
1,355,473	-		LU632_RS07155	0.36	-1.3
1,355,540	-		LU632_RS07155	0.53	-1.2
1,355,604	-		LU632_RS07155	0.69	-0.6
1,355,681	-		LU632_RS07155	0.89	-0.8
1,355,692	+				-1.8
1,355,692	+				-1.3
1,355,824	+		LU632_RS07160	0.21	-1.3
1,355,826	+		LU632_RS07160	0.21	-2.5
1,355,857	+		LU632_RS07160	0.26	+0.8
1,355,871	+		LU632_RS07160	0.29	+1.7
1,355,929	+		LU632_RS07160	0.39	+0.1
1,355,932	+		LU632_RS07160	0.40	+0.7
1,355,932	+		LU632_RS07160	0.40	+0.7
1,355,932	+		LU632_RS07160	0.40	-0.9
1,355,932	+		LU632_RS07160	0.40	+0.5
1,355,933	-		LU632_RS07160	0.40	-2.2
1,355,933	-		LU632_RS07160	0.40	-0.7
1,356,085	+		LU632_RS07160	0.67	-0.8
1,356,085	+		LU632_RS07160	0.67	+0.2
1,356,085	+		LU632_RS07160	0.67	+0.8
1,356,086	-		LU632_RS07160	0.67	-1.1
1,356,158	-		LU632_RS07160	0.80	+1.0
1,356,169	+		LU632_RS07160	0.81	+1.8
1,356,170	-		LU632_RS07160	0.82	+0.9
1,356,170	-		LU632_RS07160	0.82	-0.2
1,356,170	-		LU632_RS07160	0.82	+1.1
1,356,211	+		LU632_RS07160	0.89	-0.5
1,356,272	-				-2.8
1,356,307	-				-0.9
1,356,338	-				-2.4
1,356,354	+				-0.1
1,356,354	+				+0.6
1,356,355	-				+0.9
1,356,355	-				-3.5
1,356,436	-		LU632_RS07165	0.13	+0.7
1,356,436	-		LU632_RS07165	0.13	+0.8
1,356,467	+		LU632_RS07165	0.16	-0.9
1,356,468	-		LU632_RS07165	0.16	-0.7
1,356,574	+		LU632_RS07165	0.25	+0.3
1,356,667	+		LU632_RS07165	0.33	-0.9
1,356,667	+		LU632_RS07165	0.33	+2.4
1,356,668	-		LU632_RS07165	0.33	+0.9
1,356,678	+		LU632_RS07165	0.34	+2.5
1,356,707	+		LU632_RS07165	0.36	+0.7
1,356,708	-		LU632_RS07165	0.36	-0.3
1,356,708	-		LU632_RS07165	0.36	+0.3