Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07075

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,341,647	-				+1.9
1,341,696	+				-0.3
1,341,700	+				+2.3
1,341,700	+				-1.3
1,341,700	+				-1.5
1,341,700	+				-0.5
1,341,701	-				+2.6
1,341,701	-				+0.7
1,341,701	-				-0.1
1,341,704	+				+0.3
1,341,705	-				-0.4
1,341,705	-				-1.5
1,341,705	-				+0.4
1,341,705	-				-1.1
1,341,779	-				+2.3
1,341,779	-				-0.6
1,341,779	-				-1.6
1,341,807	+				+0.7
1,341,808	-				-0.3
1,341,808	-				-1.8
1,341,861	-				+0.5
1,341,874	-				-0.6
1,341,916	-		LU632_RS07070	0.11	+0.7
1,342,059	-		LU632_RS07070	0.39	+1.3
1,342,095	-		LU632_RS07070	0.46	+0.7
1,342,236	-		LU632_RS07070	0.73	-1.6
1,342,236	-		LU632_RS07070	0.73	+0.1
1,342,417	+				+0.4
1,342,607	+		LU632_RS07075	0.21	-1.1
1,342,625	+		LU632_RS07075	0.27	-1.1
1,342,625	+		LU632_RS07075	0.27	+0.1
1,342,625	+		LU632_RS07075	0.27	-2.8
1,342,625	+		LU632_RS07075	0.27	-0.1
1,342,625	+		LU632_RS07075	0.27	-0.9
1,342,627	+		LU632_RS07075	0.28	-0.3
1,342,628	-		LU632_RS07075	0.28	+0.3
1,342,628	-		LU632_RS07075	0.28	-0.2
1,342,748	-		LU632_RS07075	0.67	+0.9
1,342,748	-		LU632_RS07075	0.67	+0.8
1,342,748	-		LU632_RS07075	0.67	-1.9
1,342,751	+		LU632_RS07075	0.68	-0.3
1,342,752	-		LU632_RS07075	0.68	-0.2
1,342,755	-		LU632_RS07075	0.69	+0.8
1,342,755	-		LU632_RS07075	0.69	-0.1
1,342,755	-		LU632_RS07075	0.69	-0.1
1,342,890	+				-0.5
1,342,890	+				-0.6
1,342,891	-				+2.6
1,342,891	-				-0.6
1,342,891	-				-1.3
1,342,891	-				+0.4
1,342,891	-				+1.0
1,342,975	-		LU632_RS07080	0.17	+0.6
1,342,991	-		LU632_RS07080	0.20	-0.4
1,342,991	-		LU632_RS07080	0.20	-1.9
1,342,994	+		LU632_RS07080	0.21	+1.4
1,343,123	-		LU632_RS07080	0.47	+0.7
1,343,123	-		LU632_RS07080	0.47	-1.9
1,343,123	-		LU632_RS07080	0.47	+0.0
1,343,252	+		LU632_RS07080	0.74	+0.5
1,343,276	+		LU632_RS07080	0.79	-0.3
1,343,278	+		LU632_RS07080	0.79	+0.1
1,343,278	+		LU632_RS07080	0.79	+1.1
1,343,278	+		LU632_RS07080	0.79	+1.1
1,343,278	+		LU632_RS07080	0.79	-0.1
1,343,279	-		LU632_RS07080	0.79	+1.9
1,343,279	-		LU632_RS07080	0.79	+0.8
1,343,286	+		LU632_RS07080	0.81	+0.9
1,343,318	+		LU632_RS07080	0.87	-0.3
1,343,353	-				-0.1
1,343,354	+				-1.3
1,343,355	-				+1.1
1,343,355	-				+0.1
1,343,382	+				+0.6
1,343,382	+				-0.5
1,343,407	+				+1.1
1,343,438	+		LU632_RS07085	0.15	-0.6
1,343,439	-		LU632_RS07085	0.15	-0.6
1,343,439	-		LU632_RS07085	0.15	-0.7
1,343,439	-		LU632_RS07085	0.15	+1.2
1,343,439	-		LU632_RS07085	0.15	+0.2
1,343,439	-		LU632_RS07085	0.15	-1.3
1,343,480	-		LU632_RS07085	0.25	-1.6
1,343,532	-		LU632_RS07085	0.37	-0.3
1,343,532	-		LU632_RS07085	0.37	-0.9
1,343,694	-		LU632_RS07085	0.75	-2.2
1,343,729	+		LU632_RS07085	0.83	+0.2
1,343,729	+		LU632_RS07085	0.83	+0.4
1,343,729	+		LU632_RS07085	0.83	-0.2
1,343,729	+		LU632_RS07085	0.83	+1.4
1,343,730	-		LU632_RS07085	0.83	+0.2
1,343,730	-		LU632_RS07085	0.83	-2.1
1,343,730	-		LU632_RS07085	0.83	+0.7
1,343,730	-		LU632_RS07085	0.83	+0.4