Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06780

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,300,906	+		LU632_RS06770	0.19	+3.7
1,300,943	-		LU632_RS06770	0.31	-0.1
1,300,979	+		LU632_RS06770	0.42	-0.6
1,300,979	+		LU632_RS06770	0.42	-0.6
1,300,979	+		LU632_RS06770	0.42	-0.7
1,300,986	+		LU632_RS06770	0.44	+0.7
1,301,103	+		LU632_RS06770	0.80	+0.1
1,301,104	-		LU632_RS06770	0.81	-1.1
1,301,104	-		LU632_RS06770	0.81	-0.3
1,301,104	-		LU632_RS06770	0.81	+0.3
1,301,104	-		LU632_RS06770	0.81	+0.9
1,301,139	+				-0.7
1,301,145	+				+0.6
1,301,199	+				-0.2
1,301,236	-				+1.4
1,301,273	+				-1.8
1,301,273	+				-0.1
1,301,274	-				-1.1
1,301,278	-				-0.4
1,301,326	+		LU632_RS06775	0.14	-0.5
1,301,375	-		LU632_RS06775	0.34	+1.2
1,301,468	+		LU632_RS06775	0.72	+0.0
1,301,469	-		LU632_RS06775	0.73	-0.9
1,301,508	+		LU632_RS06775	0.89	+0.7
1,301,596	-				+1.4
1,301,644	-				-0.2
1,301,687	-				+0.4
1,301,701	+				-0.6
1,301,701	+				+0.9
1,301,717	-				+0.7
1,301,719	+				+0.9
1,301,720	-				+1.1
1,301,720	-				-0.6
1,301,802	-				-1.0
1,303,217	-				-0.3
1,303,217	-				-0.1
1,303,442	+		LU632_RS06785	0.16	+1.9
1,303,483	-		LU632_RS06785	0.20	+1.0
1,303,795	+		LU632_RS06785	0.51	-1.1
1,303,795	+		LU632_RS06785	0.51	-0.6
1,303,795	+		LU632_RS06785	0.51	+0.5
1,303,831	-		LU632_RS06785	0.55	-0.9