Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysA and cysW are separated by 14 nucleotides cysW and cysT overlap by 1 nucleotides cysT and cysP overlap by 1 nucleotides
LU632_RS06680: cysA - sulfate/thiosulfate ABC transporter ATP-binding protein CysA, at 1,284,187 to 1,285,275
cysA
LU632_RS06685: cysW - sulfate/thiosulfate ABC transporter permease CysW, at 1,285,290 to 1,286,138
cysW
LU632_RS06690: cysT - sulfate/thiosulfate ABC transporter permease CysT, at 1,286,138 to 1,286,971
cysT
LU632_RS06695: cysP - thiosulfate ABC transporter substrate-binding protein CysP, at 1,286,971 to 1,287,987
cysP
Position (kb) 1285
1286
1287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1284.290 kb on + strand at 1284.291 kb on + strand at 1284.291 kb on + strand at 1284.363 kb on - strand, within cysA at 1284.451 kb on + strand, within cysA at 1284.488 kb on + strand, within cysA at 1284.634 kb on - strand, within cysA at 1284.717 kb on + strand, within cysA at 1284.717 kb on + strand, within cysA at 1284.718 kb on - strand, within cysA at 1285.028 kb on + strand, within cysA at 1285.028 kb on + strand, within cysA at 1285.029 kb on - strand, within cysA at 1285.138 kb on - strand, within cysA at 1285.141 kb on + strand, within cysA at 1285.142 kb on - strand, within cysA at 1285.142 kb on - strand, within cysA at 1285.142 kb on - strand, within cysA at 1285.142 kb on - strand, within cysA at 1285.145 kb on - strand, within cysA at 1285.177 kb on + strand at 1285.215 kb on + strand at 1285.257 kb on + strand at 1285.400 kb on + strand, within cysW at 1285.401 kb on - strand, within cysW at 1285.401 kb on - strand, within cysW at 1285.403 kb on + strand, within cysW at 1285.403 kb on + strand, within cysW at 1285.405 kb on + strand, within cysW at 1285.405 kb on + strand, within cysW at 1285.406 kb on - strand, within cysW at 1285.406 kb on - strand, within cysW at 1285.406 kb on - strand, within cysW at 1285.406 kb on - strand, within cysW at 1285.432 kb on - strand, within cysW at 1285.442 kb on + strand, within cysW at 1285.442 kb on + strand, within cysW at 1285.442 kb on + strand, within cysW at 1285.445 kb on - strand, within cysW at 1285.528 kb on + strand, within cysW at 1285.529 kb on - strand, within cysW at 1285.715 kb on + strand, within cysW at 1285.715 kb on + strand, within cysW at 1285.716 kb on - strand, within cysW at 1285.716 kb on - strand, within cysW at 1285.781 kb on - strand, within cysW at 1285.781 kb on - strand, within cysW at 1285.820 kb on + strand, within cysW at 1285.884 kb on + strand, within cysW at 1285.889 kb on + strand, within cysW at 1285.890 kb on - strand, within cysW at 1285.890 kb on - strand, within cysW at 1285.905 kb on + strand, within cysW at 1286.075 kb on + strand at 1286.076 kb on - strand at 1286.079 kb on + strand at 1286.140 kb on - strand at 1286.308 kb on + strand, within cysT at 1286.308 kb on + strand, within cysT at 1286.309 kb on - strand, within cysT at 1286.525 kb on - strand, within cysT at 1286.559 kb on + strand, within cysT at 1286.733 kb on - strand, within cysT at 1286.832 kb on + strand, within cysT at 1286.953 kb on + strand at 1286.960 kb on - strand at 1286.965 kb on + strand at 1286.990 kb on - strand at 1287.035 kb on - strand at 1287.074 kb on - strand, within cysP at 1287.137 kb on + strand, within cysP at 1287.138 kb on - strand, within cysP at 1287.138 kb on - strand, within cysP at 1287.138 kb on - strand, within cysP
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 1,284,290 + +3.0 1,284,291 + -1.0 1,284,291 + +0.9 1,284,363 - cysA LU632_RS06680 0.16 -0.8 1,284,451 + cysA LU632_RS06680 0.24 +1.1 1,284,488 + cysA LU632_RS06680 0.28 -2.6 1,284,634 - cysA LU632_RS06680 0.41 +0.2 1,284,717 + cysA LU632_RS06680 0.49 +0.1 1,284,717 + cysA LU632_RS06680 0.49 -0.0 1,284,718 - cysA LU632_RS06680 0.49 -0.1 1,285,028 + cysA LU632_RS06680 0.77 -0.8 1,285,028 + cysA LU632_RS06680 0.77 +0.1 1,285,029 - cysA LU632_RS06680 0.77 -0.6 1,285,138 - cysA LU632_RS06680 0.87 -0.1 1,285,141 + cysA LU632_RS06680 0.88 -1.6 1,285,142 - cysA LU632_RS06680 0.88 -0.1 1,285,142 - cysA LU632_RS06680 0.88 -0.9 1,285,142 - cysA LU632_RS06680 0.88 +0.9 1,285,142 - cysA LU632_RS06680 0.88 +0.6 1,285,145 - cysA LU632_RS06680 0.88 +0.5 1,285,177 + -0.2 1,285,215 + +0.3 1,285,257 + +1.6 1,285,400 + cysW LU632_RS06685 0.13 +0.8 1,285,401 - cysW LU632_RS06685 0.13 -0.6 1,285,401 - cysW LU632_RS06685 0.13 +0.0 1,285,403 + cysW LU632_RS06685 0.13 -0.4 1,285,403 + cysW LU632_RS06685 0.13 +0.4 1,285,405 + cysW LU632_RS06685 0.14 +1.1 1,285,405 + cysW LU632_RS06685 0.14 +1.4 1,285,406 - cysW LU632_RS06685 0.14 -0.4 1,285,406 - cysW LU632_RS06685 0.14 +1.7 1,285,406 - cysW LU632_RS06685 0.14 -2.0 1,285,406 - cysW LU632_RS06685 0.14 -2.1 1,285,432 - cysW LU632_RS06685 0.17 +0.2 1,285,442 + cysW LU632_RS06685 0.18 -0.3 1,285,442 + cysW LU632_RS06685 0.18 +0.5 1,285,442 + cysW LU632_RS06685 0.18 +2.9 1,285,445 - cysW LU632_RS06685 0.18 +0.5 1,285,528 + cysW LU632_RS06685 0.28 +0.1 1,285,529 - cysW LU632_RS06685 0.28 -0.9 1,285,715 + cysW LU632_RS06685 0.50 -0.9 1,285,715 + cysW LU632_RS06685 0.50 +0.4 1,285,716 - cysW LU632_RS06685 0.50 -0.8 1,285,716 - cysW LU632_RS06685 0.50 +0.7 1,285,781 - cysW LU632_RS06685 0.58 -0.3 1,285,781 - cysW LU632_RS06685 0.58 -0.4 1,285,820 + cysW LU632_RS06685 0.62 -0.0 1,285,884 + cysW LU632_RS06685 0.70 +2.0 1,285,889 + cysW LU632_RS06685 0.71 +0.7 1,285,890 - cysW LU632_RS06685 0.71 -0.9 1,285,890 - cysW LU632_RS06685 0.71 +1.0 1,285,905 + cysW LU632_RS06685 0.72 -1.3 1,286,075 + +1.2 1,286,076 - -0.8 1,286,079 + +0.1 1,286,140 - +3.8 1,286,308 + cysT LU632_RS06690 0.20 -1.4 1,286,308 + cysT LU632_RS06690 0.20 -0.6 1,286,309 - cysT LU632_RS06690 0.21 -0.2 1,286,525 - cysT LU632_RS06690 0.46 -2.8 1,286,559 + cysT LU632_RS06690 0.50 -0.9 1,286,733 - cysT LU632_RS06690 0.71 +0.2 1,286,832 + cysT LU632_RS06690 0.83 -1.2 1,286,953 + -0.6 1,286,960 - +0.1 1,286,965 + +0.7 1,286,990 - +1.5 1,287,035 - -0.1 1,287,074 - cysP LU632_RS06695 0.10 -0.8 1,287,137 + cysP LU632_RS06695 0.16 -2.3 1,287,138 - cysP LU632_RS06695 0.16 -0.8 1,287,138 - cysP LU632_RS06695 0.16 +0.7 1,287,138 - cysP LU632_RS06695 0.16 -0.9
Or see this region's nucleotide sequence