Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06330

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,212,325	-				+0.6
1,212,402	-				+0.3
1,212,449	+				-1.0
1,212,450	-				-0.3
1,212,453	+				-0.5
1,212,453	+				-1.8
1,212,836	+	garL	LU632_RS06325	0.51	+1.3
1,212,837	-	garL	LU632_RS06325	0.51	+0.1
1,212,837	-	garL	LU632_RS06325	0.51	+0.1
1,212,837	-	garL	LU632_RS06325	0.51	-1.1
1,212,885	+	garL	LU632_RS06325	0.57	-0.8
1,212,886	-	garL	LU632_RS06325	0.57	-1.8
1,212,923	-	garL	LU632_RS06325	0.62	+0.9
1,212,923	-	garL	LU632_RS06325	0.62	-0.8
1,213,086	+	garL	LU632_RS06325	0.83	-2.2
1,213,086	+	garL	LU632_RS06325	0.83	+2.0
1,213,087	-	garL	LU632_RS06325	0.84	-0.6
1,213,191	+				+0.4
1,213,415	+	garR	LU632_RS06330	0.20	-2.0
1,213,415	+	garR	LU632_RS06330	0.20	-1.3
1,213,497	-	garR	LU632_RS06330	0.29	+0.1
1,213,506	-	garR	LU632_RS06330	0.31	-2.9
1,213,512	-	garR	LU632_RS06330	0.31	-2.6
1,213,674	+	garR	LU632_RS06330	0.49	+0.6
1,213,734	-	garR	LU632_RS06330	0.56	-0.3
1,213,776	-	garR	LU632_RS06330	0.61	-3.3
1,213,911	-	garR	LU632_RS06330	0.76	+0.1
1,213,911	-	garR	LU632_RS06330	0.76	-0.6
1,213,944	-	garR	LU632_RS06330	0.80	-2.1
1,213,946	+	garR	LU632_RS06330	0.80	-1.6
1,213,947	-	garR	LU632_RS06330	0.80	-1.6
1,214,188	+				+2.0
1,214,188	+				+1.5
1,214,189	-				+1.7
1,214,189	-				-0.4
1,214,189	-				-2.3
1,214,190	+				-0.2
1,214,191	-				-1.1
1,214,191	-				-1.1
1,214,191	-				-1.1
1,214,218	+				-0.9
1,214,219	-				-1.4
1,214,221	-				-0.9
1,214,420	-		LU632_RS06335	0.20	-2.6
1,214,450	-		LU632_RS06335	0.23	-1.7
1,214,547	+		LU632_RS06335	0.31	-2.9
1,214,648	+		LU632_RS06335	0.40	-2.1
1,214,697	-		LU632_RS06335	0.44	-1.3
1,214,697	-		LU632_RS06335	0.44	+0.1
1,214,913	-		LU632_RS06335	0.63	-2.9
1,214,913	-		LU632_RS06335	0.63	-3.6
1,214,913	-		LU632_RS06335	0.63	+0.1
1,214,913	-		LU632_RS06335	0.63	-3.0
1,214,913	-		LU632_RS06335	0.63	-0.5