Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06280

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,201,583	+	ppnN	LU632_RS06275	0.42	+0.2
1,201,627	-	ppnN	LU632_RS06275	0.45	-0.2
1,201,646	-	ppnN	LU632_RS06275	0.46	+0.3
1,201,646	-	ppnN	LU632_RS06275	0.46	-1.2
1,201,646	-	ppnN	LU632_RS06275	0.46	+1.7
1,201,765	-	ppnN	LU632_RS06275	0.55	-0.6
1,201,766	+	ppnN	LU632_RS06275	0.55	-2.4
1,201,837	-	ppnN	LU632_RS06275	0.60	-0.9
1,201,842	+	ppnN	LU632_RS06275	0.61	+2.3
1,201,842	+	ppnN	LU632_RS06275	0.61	-0.3
1,201,843	-	ppnN	LU632_RS06275	0.61	-1.4
1,201,893	-	ppnN	LU632_RS06275	0.64	+0.3
1,202,057	-	ppnN	LU632_RS06275	0.76	-0.1
1,202,078	-	ppnN	LU632_RS06275	0.78	+1.3
1,202,109	+	ppnN	LU632_RS06275	0.80	+1.7
1,202,182	+	ppnN	LU632_RS06275	0.86	-0.5
1,202,251	-				+0.9
1,202,388	+				-0.9
1,202,389	-				+0.0
1,202,431	+				-0.5
1,202,432	-				+0.1
1,202,455	+				+0.8
1,202,456	-				+0.0
1,202,456	-				-1.6
1,202,457	+				-1.1
1,202,457	+				+1.0
1,202,462	-				-0.3
1,202,515	-				-1.7
1,202,521	-				+0.7
1,202,525	+				+0.7
1,202,526	-				+1.7
1,202,526	-				-0.4
1,202,599	+				-0.0
1,202,600	-				-3.2
1,202,600	-				-1.9
1,202,650	+				+3.1
1,202,651	-				-0.6
1,202,651	-				-0.2
1,202,652	+	queF	LU632_RS06280	0.10	+1.2
1,202,652	+	queF	LU632_RS06280	0.10	+2.3
1,202,653	-	queF	LU632_RS06280	0.10	+2.0
1,202,662	-	queF	LU632_RS06280	0.11	-1.0
1,202,662	-	queF	LU632_RS06280	0.11	+0.9
1,202,662	-	queF	LU632_RS06280	0.11	-1.4
1,202,698	+	queF	LU632_RS06280	0.15	-1.4
1,202,807	+	queF	LU632_RS06280	0.28	+1.7
1,202,893	-	queF	LU632_RS06280	0.39	+1.7
1,202,893	-	queF	LU632_RS06280	0.39	+0.7
1,202,934	+	queF	LU632_RS06280	0.43	+0.0
1,202,934	+	queF	LU632_RS06280	0.43	-0.3
1,202,935	-	queF	LU632_RS06280	0.43	-0.6
1,202,935	-	queF	LU632_RS06280	0.43	+0.6
1,202,935	-	queF	LU632_RS06280	0.43	-0.0
1,202,935	-	queF	LU632_RS06280	0.43	+0.2
1,202,935	-	queF	LU632_RS06280	0.43	-0.0
1,202,965	+	queF	LU632_RS06280	0.47	-1.1
1,202,966	-	queF	LU632_RS06280	0.47	+1.4
1,202,966	-	queF	LU632_RS06280	0.47	-1.2
1,203,003	-	queF	LU632_RS06280	0.52	-2.2
1,203,118	+	queF	LU632_RS06280	0.65	+0.0
1,203,203	+	queF	LU632_RS06280	0.75	+0.9
1,203,204	-	queF	LU632_RS06280	0.75	-0.9
1,203,235	-	queF	LU632_RS06280	0.79	-0.9
1,203,327	-	queF	LU632_RS06280	0.90	-1.6
1,203,339	+				+1.0
1,203,340	+				-0.1
1,203,340	-				-1.9
1,203,340	-				+0.4
1,203,343	+				-0.9
1,203,352	-				+0.4
1,203,352	-				+0.9
1,203,490	-				+0.6
1,203,525	+				+0.2
1,203,600	+				-0.0
1,203,654	+	syd	LU632_RS06285	0.17	+0.3
1,203,655	-	syd	LU632_RS06285	0.17	-0.0
1,203,655	-	syd	LU632_RS06285	0.17	-0.2
1,203,657	-	syd	LU632_RS06285	0.18	-0.3
1,203,657	-	syd	LU632_RS06285	0.18	-0.5
1,203,657	-	syd	LU632_RS06285	0.18	-0.0
1,203,657	-	syd	LU632_RS06285	0.18	-0.6
1,203,657	-	syd	LU632_RS06285	0.18	+1.8
1,203,686	+	syd	LU632_RS06285	0.23	-0.9
1,203,722	+	syd	LU632_RS06285	0.29	+1.6
1,203,795	+	syd	LU632_RS06285	0.42	+1.7
1,203,796	-	syd	LU632_RS06285	0.42	+3.2
1,203,797	+	syd	LU632_RS06285	0.42	-0.3
1,203,797	+	syd	LU632_RS06285	0.42	+1.2
1,203,797	+	syd	LU632_RS06285	0.42	+0.6
1,203,797	+	syd	LU632_RS06285	0.42	+0.4
1,203,798	-	syd	LU632_RS06285	0.42	+0.8
1,203,818	+	syd	LU632_RS06285	0.46	+0.3
1,203,818	+	syd	LU632_RS06285	0.46	+1.4
1,203,819	-	syd	LU632_RS06285	0.46	-0.5
1,203,962	+	syd	LU632_RS06285	0.71	+0.1
1,203,963	-	syd	LU632_RS06285	0.71	+0.8
1,203,984	-	syd	LU632_RS06285	0.74	-2.7
1,203,984	-	syd	LU632_RS06285	0.74	+0.7
1,203,984	-	syd	LU632_RS06285	0.74	-0.9
1,203,996	-	syd	LU632_RS06285	0.77	-2.9