Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06145

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,169,977	-		LU632_RS06140	0.23	+0.3
1,170,223	-		LU632_RS06140	0.43	-1.3
1,170,243	-		LU632_RS06140	0.44	+0.2
1,170,247	+		LU632_RS06140	0.45	-0.0
1,170,248	-		LU632_RS06140	0.45	-0.7
1,170,272	+		LU632_RS06140	0.47	+0.7
1,170,272	+		LU632_RS06140	0.47	-1.2
1,170,332	+		LU632_RS06140	0.52	-0.0
1,170,335	-		LU632_RS06140	0.52	+0.5
1,170,388	+		LU632_RS06140	0.56	-0.6
1,170,388	+		LU632_RS06140	0.56	+0.6
1,170,389	-		LU632_RS06140	0.56	+2.9
1,170,428	-		LU632_RS06140	0.59	-1.7
1,170,599	+		LU632_RS06140	0.73	-0.2
1,170,626	-		LU632_RS06140	0.75	-0.1
1,170,626	-		LU632_RS06140	0.75	+1.7
1,170,706	-		LU632_RS06140	0.82	-1.0
1,170,709	+		LU632_RS06140	0.82	+0.7
1,170,710	+		LU632_RS06140	0.82	-1.0
1,170,710	-		LU632_RS06140	0.82	+0.1
1,170,838	-				-1.7
1,170,891	-				-0.3
1,170,900	+				-1.8
1,170,913	-				+1.0
1,170,934	+				+1.1
1,170,934	+				-0.0
1,170,977	+				-0.6
1,170,978	-				-0.4
1,171,026	+		LU632_RS06145	0.10	+0.6
1,171,102	+		LU632_RS06145	0.18	-0.8
1,171,185	+		LU632_RS06145	0.25	+0.2
1,171,240	-		LU632_RS06145	0.31	+1.1
1,171,423	+		LU632_RS06145	0.48	+0.2
1,171,423	+		LU632_RS06145	0.48	-2.3
1,171,424	-		LU632_RS06145	0.48	-0.4
1,171,424	-		LU632_RS06145	0.48	-1.1
1,171,494	+		LU632_RS06145	0.55	+0.2
1,171,498	-		LU632_RS06145	0.55	+0.7
1,171,501	+		LU632_RS06145	0.56	+0.1
1,171,502	-		LU632_RS06145	0.56	-1.6
1,171,603	-		LU632_RS06145	0.65	+1.3
1,171,670	+		LU632_RS06145	0.72	-2.0
1,171,670	+		LU632_RS06145	0.72	+1.0
1,171,670	+		LU632_RS06145	0.72	+0.2
1,171,672	+		LU632_RS06145	0.72	+1.6
1,171,673	-		LU632_RS06145	0.72	+0.2
1,171,673	-		LU632_RS06145	0.72	+2.7
1,171,689	+		LU632_RS06145	0.73	+1.9
1,171,690	-		LU632_RS06145	0.74	+1.1
1,171,711	+		LU632_RS06145	0.76	-0.1
1,171,908	+				-0.7
1,171,909	-				+2.9
1,171,968	-				+1.4
1,171,968	-				+1.1
1,172,012	-				+0.3
1,172,024	-				+0.2
1,172,024	-				+0.8
1,172,053	-		LU632_RS06150	0.11	-0.0
1,172,054	+		LU632_RS06150	0.11	+0.0
1,172,055	-		LU632_RS06150	0.11	+1.9
1,172,470	-		LU632_RS06150	0.61	+0.1
1,172,489	+		LU632_RS06150	0.63	+0.7
1,172,489	+		LU632_RS06150	0.63	-1.4
1,172,490	-		LU632_RS06150	0.63	+1.7
1,172,490	-		LU632_RS06150	0.63	-1.6
1,172,490	-		LU632_RS06150	0.63	+0.6
1,172,490	-		LU632_RS06150	0.63	+1.1
1,172,681	+		LU632_RS06150	0.86	-2.7
1,172,682	-		LU632_RS06150	0.86	+1.1
1,172,724	+				-0.2
1,172,724	+				+0.7
1,172,804	-				-0.7
1,172,843	+				+1.4
1,172,843	+				-0.6
1,172,844	-				-1.2
1,172,867	-				-1.8