Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05915

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,120,634	+	gcvT	LU632_RS05905	0.53	+1.2
1,120,757	+	gcvT	LU632_RS05905	0.64	+0.8
1,120,801	+	gcvT	LU632_RS05905	0.68	+0.5
1,120,839	-	gcvT	LU632_RS05905	0.72	-0.8
1,120,951	+	gcvT	LU632_RS05905	0.82	-0.2
1,120,951	+	gcvT	LU632_RS05905	0.82	+0.2
1,121,024	-	gcvT	LU632_RS05905	0.89	-2.6
1,121,024	-	gcvT	LU632_RS05905	0.89	-0.2
1,121,076	+				+2.0
1,121,076	+				-0.2
1,121,077	-				-0.7
1,121,077	-				+0.5
1,121,148	-				+1.8
1,121,196	+				-0.2
1,121,232	+				+0.8
1,121,233	-				-1.0
1,121,236	+				+2.0
1,121,249	+				-1.4
1,121,251	-				+2.0
1,121,375	+	gcvH	LU632_RS05910	0.40	-1.7
1,121,376	-	gcvH	LU632_RS05910	0.40	+2.1
1,121,432	+	gcvH	LU632_RS05910	0.54	-0.6
1,121,432	+	gcvH	LU632_RS05910	0.54	+0.2
1,121,432	+	gcvH	LU632_RS05910	0.54	-1.4
1,121,432	+	gcvH	LU632_RS05910	0.54	-0.5
1,121,432	+	gcvH	LU632_RS05910	0.54	+0.1
1,121,432	+	gcvH	LU632_RS05910	0.54	+1.0
1,121,432	+	gcvH	LU632_RS05910	0.54	-0.0
1,121,432	+	gcvH	LU632_RS05910	0.54	-1.4
1,121,432	+	gcvH	LU632_RS05910	0.54	-0.5
1,121,432	+	gcvH	LU632_RS05910	0.54	-0.0
1,121,433	-	gcvH	LU632_RS05910	0.55	-1.0
1,121,433	-	gcvH	LU632_RS05910	0.55	-1.1
1,121,433	-	gcvH	LU632_RS05910	0.55	+0.4
1,121,433	-	gcvH	LU632_RS05910	0.55	+1.5
1,121,463	+	gcvH	LU632_RS05910	0.62	-0.2
1,121,464	-	gcvH	LU632_RS05910	0.63	-0.8
1,121,587	+				-1.4
1,121,597	-				+1.5
1,121,597	-				+1.8
1,121,597	-				-2.7
1,121,661	+				-1.9
1,121,661	+				+1.1
1,121,673	+				-0.3
1,121,779	-				-1.1
1,121,873	-				+0.7
1,121,881	+				-0.1
1,121,896	+				+0.8
1,121,956	+	gcvP	LU632_RS05915	0.11	+1.1
1,121,965	+	gcvP	LU632_RS05915	0.12	+0.4
1,121,965	+	gcvP	LU632_RS05915	0.12	-0.8
1,121,966	-	gcvP	LU632_RS05915	0.12	-2.6
1,122,030	-	gcvP	LU632_RS05915	0.14	+0.6
1,122,131	+	gcvP	LU632_RS05915	0.17	-1.0
1,122,131	+	gcvP	LU632_RS05915	0.17	+2.6
1,122,256	+	gcvP	LU632_RS05915	0.22	+0.2
1,122,316	+	gcvP	LU632_RS05915	0.24	-2.6
1,122,316	+	gcvP	LU632_RS05915	0.24	+1.0
1,122,378	+	gcvP	LU632_RS05915	0.26	-1.0
1,122,467	-	gcvP	LU632_RS05915	0.29	-0.6
1,122,562	-	gcvP	LU632_RS05915	0.32	-0.3
1,122,562	-	gcvP	LU632_RS05915	0.32	-1.4
1,122,630	+	gcvP	LU632_RS05915	0.35	-0.2
1,122,636	+	gcvP	LU632_RS05915	0.35	+0.3
1,122,637	-	gcvP	LU632_RS05915	0.35	-1.4
1,122,637	-	gcvP	LU632_RS05915	0.35	-0.3
1,122,637	-	gcvP	LU632_RS05915	0.35	-1.4
1,122,660	+	gcvP	LU632_RS05915	0.36	-0.8
1,122,738	+	gcvP	LU632_RS05915	0.38	-0.2
1,122,738	+	gcvP	LU632_RS05915	0.38	+0.8
1,122,739	-	gcvP	LU632_RS05915	0.38	-0.2
1,122,739	-	gcvP	LU632_RS05915	0.38	+0.1
1,122,739	-	gcvP	LU632_RS05915	0.38	+1.5
1,122,881	-	gcvP	LU632_RS05915	0.43	-0.6
1,122,881	-	gcvP	LU632_RS05915	0.43	-1.6
1,122,946	-	gcvP	LU632_RS05915	0.46	-0.0
1,123,102	+	gcvP	LU632_RS05915	0.51	-0.4
1,123,102	+	gcvP	LU632_RS05915	0.51	-1.3
1,123,102	+	gcvP	LU632_RS05915	0.51	-0.1
1,123,102	+	gcvP	LU632_RS05915	0.51	-2.1
1,123,103	-	gcvP	LU632_RS05915	0.51	+0.1
1,123,171	-	gcvP	LU632_RS05915	0.53	+0.9
1,123,207	-	gcvP	LU632_RS05915	0.55	-1.0
1,123,264	+	gcvP	LU632_RS05915	0.57	+0.4
1,123,683	+	gcvP	LU632_RS05915	0.71	+2.7
1,123,683	+	gcvP	LU632_RS05915	0.71	-0.1
1,123,717	+	gcvP	LU632_RS05915	0.72	-0.1
1,123,718	-	gcvP	LU632_RS05915	0.72	-0.6
1,123,719	+	gcvP	LU632_RS05915	0.72	-1.0
1,123,936	+	gcvP	LU632_RS05915	0.80	-0.0
1,123,936	+	gcvP	LU632_RS05915	0.80	-1.0
1,124,003	-	gcvP	LU632_RS05915	0.82	-1.4
1,124,039	+	gcvP	LU632_RS05915	0.83	+1.3
1,124,039	+	gcvP	LU632_RS05915	0.83	+0.8
1,124,041	+	gcvP	LU632_RS05915	0.84	+2.2
1,124,075	+	gcvP	LU632_RS05915	0.85	+0.2
1,124,077	-	gcvP	LU632_RS05915	0.85	-0.8
1,124,077	-	gcvP	LU632_RS05915	0.85	+0.4
1,124,244	+				+0.6
1,124,245	-				-1.0
1,124,245	-				+0.8
1,124,306	+				-0.0
1,124,374	+				-1.6
1,124,375	-				-1.6
1,124,375	-				-0.8
1,124,415	+				-1.0
1,124,416	-				-0.5
1,124,416	-				+1.0
1,124,416	-				-0.8
1,124,419	+				-1.9
1,124,529	-				-0.1
1,124,556	-				-1.0
1,124,564	+				-1.8
1,124,568	+				+0.7
1,124,635	-				-0.2
1,124,717	+				-1.4
1,124,717	+				+1.5
1,124,717	+				+0.2
1,124,717	+				-1.8
1,124,718	-				-0.6
1,124,813	+		LU632_RS05920	0.12	+0.7
1,124,813	+		LU632_RS05920	0.12	-1.1
1,124,852	-		LU632_RS05920	0.25	-1.7
1,124,852	-		LU632_RS05920	0.25	-1.7
1,124,967	-		LU632_RS05920	0.65	+1.7
1,125,030	-		LU632_RS05920	0.87	+0.7
1,125,030	-		LU632_RS05920	0.87	+0.8
1,125,042	-				+0.0
1,125,122	+				+0.2
1,125,122	+				+0.1
1,125,123	-				+2.1
1,125,123	-				+1.3
1,125,182	-				+1.6
1,125,204	-				+2.3
1,125,279	-		LU632_RS05925	0.69	-1.7
1,125,295	-		LU632_RS05925	0.84	+1.2
1,125,328	-				-0.2
1,125,335	+				+2.4
1,125,357	-				-0.2
1,125,357	-				-1.3
1,125,370	+				-0.0
1,125,370	+				+0.2
1,125,370	+				-0.2
1,125,370	+				-1.6
1,125,371	-				-1.8
1,125,371	-				+1.1
1,125,371	-				-1.9
1,125,371	-				-0.3
1,125,395	-				+1.8
1,125,490	-				+2.2