Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05465

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,053,680	+		LU632_RS05455	0.60	-0.8
1,053,680	+		LU632_RS05455	0.60	+1.1
1,053,681	-		LU632_RS05455	0.60	-2.6
1,053,693	+		LU632_RS05455	0.62	-1.0
1,053,739	+		LU632_RS05455	0.70	-1.4
1,053,804	+		LU632_RS05455	0.82	-0.2
1,053,804	+		LU632_RS05455	0.82	+2.3
1,053,805	-		LU632_RS05455	0.82	+0.3
1,053,805	-		LU632_RS05455	0.82	-0.6
1,053,858	+				+0.8
1,053,858	+				+1.8
1,053,865	+				-0.6
1,053,866	-				+1.8
1,053,869	+				-1.8
1,053,935	+				-0.2
1,053,936	-				+0.4
1,053,979	-				+0.2
1,054,046	+		LU632_RS05460	0.19	-0.8
1,054,090	+		LU632_RS05460	0.25	-1.1
1,054,172	-		LU632_RS05460	0.37	-1.0
1,054,207	-		LU632_RS05460	0.42	-0.6
1,054,207	-		LU632_RS05460	0.42	+1.8
1,054,207	-		LU632_RS05460	0.42	-0.0
1,054,219	-		LU632_RS05460	0.44	+1.8
1,054,219	-		LU632_RS05460	0.44	+0.2
1,054,267	+		LU632_RS05460	0.50	+0.8
1,054,268	-		LU632_RS05460	0.51	+0.8
1,054,441	+		LU632_RS05460	0.75	-0.2
1,054,442	-		LU632_RS05460	0.75	+0.8
1,054,445	+		LU632_RS05460	0.76	+0.8
1,054,446	-		LU632_RS05460	0.76	+0.2
1,054,594	+				+1.8
1,054,594	+				+1.3
1,054,595	-				-0.1
1,054,618	-				-1.9
1,054,631	+				-2.4
1,054,631	+				+1.8
1,054,632	-				+0.2
1,054,648	+				+0.2
1,054,649	-				+0.5
1,054,659	-				-0.9
1,054,663	+				+0.8
1,054,663	+				-1.1
1,054,775	-		LU632_RS05465	0.14	+0.8
1,054,877	-		LU632_RS05465	0.25	-0.9
1,054,928	+		LU632_RS05465	0.30	-1.0
1,054,972	-		LU632_RS05465	0.34	+0.8
1,055,039	+		LU632_RS05465	0.41	-0.0
1,055,040	-		LU632_RS05465	0.41	+1.1
1,055,075	+		LU632_RS05465	0.44	+0.5
1,055,097	-		LU632_RS05465	0.47	+1.0
1,055,097	-		LU632_RS05465	0.47	-1.3
1,055,135	+		LU632_RS05465	0.51	-1.0
1,055,135	+		LU632_RS05465	0.51	-2.1
1,055,389	+		LU632_RS05465	0.76	-0.7
1,055,394	-		LU632_RS05465	0.77	-2.7
1,055,522	+		LU632_RS05465	0.89	+1.8
1,055,522	+		LU632_RS05465	0.89	+0.6
1,055,523	-		LU632_RS05465	0.89	+0.2
1,056,097	-				+2.4
1,056,454	-		LU632_RS05475	0.70	-2.7
1,056,505	-		LU632_RS05475	0.79	+0.7
1,056,550	-		LU632_RS05475	0.87	+1.3
1,056,552	-		LU632_RS05475	0.87	-0.2
1,056,584	-				-0.3
1,056,584	-				-0.2