Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05455

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,052,370	+	hemW	LU632_RS05445	0.69	-0.2
1,052,370	+	hemW	LU632_RS05445	0.69	+0.0
1,052,370	+	hemW	LU632_RS05445	0.69	-1.7
1,052,554	+	hemW	LU632_RS05445	0.85	-0.8
1,052,554	+	hemW	LU632_RS05445	0.85	-0.8
1,052,554	+	hemW	LU632_RS05445	0.85	-0.2
1,052,555	-	hemW	LU632_RS05445	0.85	+0.2
1,052,555	-	hemW	LU632_RS05445	0.85	-1.4
1,052,555	-	hemW	LU632_RS05445	0.85	+0.4
1,052,555	-	hemW	LU632_RS05445	0.85	-0.2
1,052,555	-	hemW	LU632_RS05445	0.85	+0.2
1,052,571	+	hemW	LU632_RS05445	0.86	+0.2
1,052,572	-	hemW	LU632_RS05445	0.86	-0.6
1,052,611	+	hemW	LU632_RS05445	0.90	-2.3
1,052,611	+	hemW	LU632_RS05445	0.90	-1.8
1,052,611	+	hemW	LU632_RS05445	0.90	+1.8
1,052,615	+				+0.4
1,052,616	-				+0.7
1,052,616	-				+0.2
1,052,666	+				-0.2
1,052,695	-				-2.2
1,052,700	+				-0.1
1,052,702	+				-0.5
1,052,703	-				+0.7
1,052,853	+		LU632_RS05450	0.22	+1.2
1,053,057	+		LU632_RS05450	0.56	-0.8
1,053,070	-		LU632_RS05450	0.58	+2.6
1,053,070	-		LU632_RS05450	0.58	-1.2
1,053,070	-		LU632_RS05450	0.58	-2.0
1,053,319	+				-0.4
1,053,391	-				+1.2
1,053,391	-				+1.6
1,053,400	+				-1.7
1,053,400	+				+2.0
1,053,401	-				-1.4
1,053,401	-				-0.7
1,053,401	-				-1.7
1,053,402	+				-1.4
1,053,402	+				-2.8
1,053,402	+				-2.0
1,053,402	+				-0.6
1,053,402	+				+1.0
1,053,403	-				-0.8
1,053,403	-				+1.1
1,053,403	-				-0.6
1,053,403	-				-0.8
1,053,403	-				+0.9
1,053,403	-				+0.3
1,053,403	-				-0.8
1,053,403	-				+0.1
1,053,403	-				+0.2
1,053,403	-				+0.2
1,053,440	-		LU632_RS05455	0.16	-1.0
1,053,457	+		LU632_RS05455	0.19	+2.4
1,053,458	-		LU632_RS05455	0.20	-1.9
1,053,458	-		LU632_RS05455	0.20	+1.8
1,053,461	-		LU632_RS05455	0.20	+0.2
1,053,508	-		LU632_RS05455	0.29	-2.0
1,053,508	-		LU632_RS05455	0.29	-0.4
1,053,680	+		LU632_RS05455	0.60	-0.8
1,053,680	+		LU632_RS05455	0.60	+1.1
1,053,681	-		LU632_RS05455	0.60	-2.6
1,053,693	+		LU632_RS05455	0.62	-1.0
1,053,739	+		LU632_RS05455	0.70	-1.4
1,053,804	+		LU632_RS05455	0.82	-0.2
1,053,804	+		LU632_RS05455	0.82	+2.3
1,053,805	-		LU632_RS05455	0.82	+0.3
1,053,805	-		LU632_RS05455	0.82	-0.6
1,053,858	+				+0.8
1,053,858	+				+1.8
1,053,865	+				-0.6
1,053,866	-				+1.8
1,053,869	+				-1.8
1,053,935	+				-0.2
1,053,936	-				+0.4
1,053,979	-				+0.2
1,054,046	+		LU632_RS05460	0.19	-0.8
1,054,090	+		LU632_RS05460	0.25	-1.1
1,054,172	-		LU632_RS05460	0.37	-1.0
1,054,207	-		LU632_RS05460	0.42	-0.6
1,054,207	-		LU632_RS05460	0.42	+1.8
1,054,207	-		LU632_RS05460	0.42	-0.0
1,054,219	-		LU632_RS05460	0.44	+1.8
1,054,219	-		LU632_RS05460	0.44	+0.2
1,054,267	+		LU632_RS05460	0.50	+0.8
1,054,268	-		LU632_RS05460	0.51	+0.8
1,054,441	+		LU632_RS05460	0.75	-0.2
1,054,442	-		LU632_RS05460	0.75	+0.8
1,054,445	+		LU632_RS05460	0.76	+0.8
1,054,446	-		LU632_RS05460	0.76	+0.2
1,054,594	+				+1.8
1,054,594	+				+1.3
1,054,595	-				-0.1
1,054,618	-				-1.9
1,054,631	+				-2.4
1,054,631	+				+1.8
1,054,632	-				+0.2
1,054,648	+				+0.2
1,054,649	-				+0.5
1,054,659	-				-0.9
1,054,663	+				+0.8
1,054,663	+				-1.1
1,054,775	-		LU632_RS05465	0.14	+0.8
1,054,877	-		LU632_RS05465	0.25	-0.9