Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05440

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,049,535	-				+0.0
1,049,607	+				+0.0
1,049,607	+				+0.7
1,049,630	+				+0.4
1,049,662	+				-2.6
1,049,714	+		LU632_RS05435	0.16	+2.5
1,049,714	+		LU632_RS05435	0.16	-1.2
1,049,715	-		LU632_RS05435	0.16	+0.7
1,049,998	-		LU632_RS05435	0.55	+1.0
1,050,044	+		LU632_RS05435	0.61	-0.8
1,050,045	-		LU632_RS05435	0.62	+3.9
1,050,084	+		LU632_RS05435	0.67	-1.6
1,050,085	-		LU632_RS05435	0.67	+0.8
1,050,291	+				-1.2
1,050,291	+				-1.9
1,050,292	-				-1.8
1,050,292	-				-0.4
1,050,330	-				+0.9
1,050,330	-				+0.5
1,050,383	+				+0.3
1,050,413	-				+1.8
1,051,522	+				-2.3
1,051,704	+	hemW	LU632_RS05445	0.12	-1.9
1,051,720	-	hemW	LU632_RS05445	0.13	+0.2
1,051,860	+	hemW	LU632_RS05445	0.25	+1.1
1,051,971	-	hemW	LU632_RS05445	0.35	-2.3
1,051,971	-	hemW	LU632_RS05445	0.35	-0.4
1,052,010	-	hemW	LU632_RS05445	0.38	+0.1
1,052,024	+	hemW	LU632_RS05445	0.39	+1.5
1,052,025	-	hemW	LU632_RS05445	0.39	+0.0
1,052,246	-	hemW	LU632_RS05445	0.58	+1.3
1,052,246	-	hemW	LU632_RS05445	0.58	-0.2
1,052,250	+	hemW	LU632_RS05445	0.59	-0.8
1,052,251	-	hemW	LU632_RS05445	0.59	-1.6
1,052,251	-	hemW	LU632_RS05445	0.59	-1.2
1,052,370	+	hemW	LU632_RS05445	0.69	-0.2
1,052,370	+	hemW	LU632_RS05445	0.69	+0.0
1,052,370	+	hemW	LU632_RS05445	0.69	-1.7