Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05210

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
1,007,092	+		LU632_RS05200	0.23	-1.0
1,007,152	+		LU632_RS05200	0.33	+0.2
1,007,169	-		LU632_RS05200	0.35	-0.4
1,007,171	-		LU632_RS05200	0.36	-0.0
1,007,172	+		LU632_RS05200	0.36	-1.2
1,007,217	+		LU632_RS05200	0.43	-0.5
1,007,284	+		LU632_RS05200	0.53	-0.9
1,007,328	+		LU632_RS05200	0.60	-0.7
1,007,338	-		LU632_RS05200	0.62	-1.2
1,007,370	+		LU632_RS05200	0.67	-2.8
1,007,405	-		LU632_RS05200	0.73	+0.3
1,007,408	+		LU632_RS05200	0.73	+0.8
1,007,409	-		LU632_RS05200	0.73	-0.5
1,007,478	+		LU632_RS05200	0.84	-0.4
1,007,478	+		LU632_RS05200	0.84	-0.5
1,007,483	-		LU632_RS05200	0.85	+1.5
1,007,484	+		LU632_RS05200	0.85	+1.6
1,007,492	+		LU632_RS05200	0.86	-0.0
1,007,583	-				+1.7
1,007,642	+		LU632_RS05205	0.18	+0.9
1,007,643	-		LU632_RS05205	0.19	-0.0
1,007,643	-		LU632_RS05205	0.19	-0.2
1,007,687	+		LU632_RS05205	0.33	+2.0
1,007,830	-		LU632_RS05205	0.79	+1.1
1,007,895	-				-0.4
1,007,965	+				+1.4
1,007,965	+				+1.3
1,007,965	+				+0.8
1,008,348	-		LU632_RS05210	0.66	-1.1
1,008,425	+		LU632_RS05210	0.85	-0.3
1,008,539	+				-1.8
1,008,540	-				-0.3
1,008,543	-				+2.4
1,008,543	-				+0.8
1,008,546	+				-1.2
1,008,546	+				+0.5
1,008,594	+		LU632_RS05215	0.11	+1.2
1,008,736	+		LU632_RS05215	0.26	+1.7
1,008,737	-		LU632_RS05215	0.26	-1.9
1,008,737	-		LU632_RS05215	0.26	+3.6
1,008,900	+		LU632_RS05215	0.42	-1.9
1,008,900	+		LU632_RS05215	0.42	+0.9
1,008,905	-		LU632_RS05215	0.43	-0.1
1,008,979	+		LU632_RS05215	0.51	-0.9
1,008,980	-		LU632_RS05215	0.51	+0.2
1,008,980	-		LU632_RS05215	0.51	+3.1
1,008,987	-		LU632_RS05215	0.51	-1.0
1,008,987	-		LU632_RS05215	0.51	-0.5
1,009,099	+		LU632_RS05215	0.63	+0.9
1,009,221	-		LU632_RS05215	0.75	+0.2
1,009,324	+		LU632_RS05215	0.86	+0.2
1,009,344	+		LU632_RS05215	0.88	-0.9
1,009,410	-				-0.5
1,009,420	+				+0.2
1,009,466	-				-1.2