Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05080 and LU632_RS05085 are separated by 103 nucleotides LU632_RS05085 and LU632_RS05090 are separated by 143 nucleotides LU632_RS05090 and LU632_RS05095 are separated by 2 nucleotides LU632_RS05095 and LU632_RS05100 are separated by 192 nucleotides LU632_RS05100 and LU632_RS05105 are separated by 10 nucleotides
LU632_RS05080: LU632_RS05080 - IS91 family transposase, at 989,249 to 990,280
_RS05080
LU632_RS05085: LU632_RS05085 - GNAT family N-acetyltransferase, at 990,384 to 990,761
_RS05085
LU632_RS05090: LU632_RS05090 - contact-dependent growth inhibition system immunity protein, at 990,905 to 991,225
_RS05090
LU632_RS05095: LU632_RS05095 - hypothetical protein, at 991,228 to 992,061
_RS05095
LU632_RS05100: LU632_RS05100 - hypothetical protein, at 992,254 to 992,616
_RS05100
LU632_RS05105: LU632_RS05105 - DUF4225 domain-containing protein, at 992,627 to 993,478
_RS05105
Position (kb) 991
992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 990.441 kb on - strand, within LU632_RS05085 at 990.624 kb on - strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.702 kb on - strand, within LU632_RS05085 at 990.738 kb on - strand at 990.738 kb on - strand at 990.744 kb on - strand at 990.747 kb on + strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.749 kb on + strand at 990.755 kb on + strand at 990.916 kb on + strand at 990.917 kb on - strand at 990.922 kb on + strand at 991.011 kb on + strand, within LU632_RS05090 at 991.011 kb on + strand, within LU632_RS05090 at 991.011 kb on + strand, within LU632_RS05090 at 991.012 kb on - strand, within LU632_RS05090 at 991.014 kb on + strand, within LU632_RS05090 at 991.015 kb on - strand, within LU632_RS05090 at 991.025 kb on + strand, within LU632_RS05090 at 991.113 kb on + strand, within LU632_RS05090 at 991.113 kb on + strand, within LU632_RS05090 at 991.114 kb on - strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.118 kb on - strand, within LU632_RS05090 at 991.118 kb on - strand, within LU632_RS05090 at 991.122 kb on - strand, within LU632_RS05090 at 991.122 kb on - strand, within LU632_RS05090 at 991.135 kb on + strand, within LU632_RS05090 at 991.225 kb on + strand at 991.225 kb on + strand at 991.229 kb on + strand at 991.229 kb on + strand at 991.230 kb on - strand at 991.255 kb on - strand at 991.255 kb on - strand at 991.257 kb on - strand at 991.257 kb on - strand at 991.257 kb on - strand at 991.307 kb on + strand at 991.407 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.439 kb on + strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.650 kb on + strand, within LU632_RS05095 at 991.650 kb on + strand, within LU632_RS05095 at 991.767 kb on + strand, within LU632_RS05095 at 991.768 kb on - strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.771 kb on - strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.773 kb on - strand, within LU632_RS05095 at 991.773 kb on - strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.777 kb on - strand, within LU632_RS05095 at 991.777 kb on - strand, within LU632_RS05095 at 991.788 kb on + strand, within LU632_RS05095 at 991.855 kb on + strand, within LU632_RS05095 at 991.856 kb on - strand, within LU632_RS05095 at 991.856 kb on - strand, within LU632_RS05095 at 991.869 kb on + strand, within LU632_RS05095 at 991.986 kb on + strand at 991.989 kb on + strand at 991.989 kb on + strand at 991.990 kb on - strand at 991.990 kb on - strand at 991.990 kb on - strand at 992.049 kb on + strand at 992.050 kb on - strand at 992.050 kb on - strand at 992.052 kb on + strand at 992.052 kb on + strand at 992.068 kb on + strand at 992.090 kb on + strand at 992.091 kb on - strand at 992.091 kb on - strand at 992.092 kb on + strand at 992.092 kb on + strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.146 kb on + strand at 992.180 kb on + strand at 992.271 kb on + strand at 992.277 kb on - strand at 992.304 kb on + strand, within LU632_RS05100 at 992.305 kb on - strand, within LU632_RS05100 at 992.336 kb on + strand, within LU632_RS05100 at 992.337 kb on - strand, within LU632_RS05100 at 992.337 kb on - strand, within LU632_RS05100 at 992.429 kb on - strand, within LU632_RS05100 at 992.463 kb on - strand, within LU632_RS05100 at 992.463 kb on - strand, within LU632_RS05100 at 992.463 kb on - strand, within LU632_RS05100 at 992.463 kb on - strand, within LU632_RS05100 at 992.488 kb on + strand, within LU632_RS05100 at 992.489 kb on - strand, within LU632_RS05100 at 992.749 kb on + strand, within LU632_RS05105 at 992.869 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.920 kb on + strand, within LU632_RS05105 at 992.923 kb on + strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.958 kb on + strand, within LU632_RS05105 at 992.959 kb on - strand, within LU632_RS05105 at 992.959 kb on - strand, within LU632_RS05105 at 992.989 kb on - strand, within LU632_RS05105 at 993.013 kb on - strand, within LU632_RS05105 at 993.030 kb on + strand, within LU632_RS05105 at 993.031 kb on - strand, within LU632_RS05105 at 993.044 kb on + strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 990,441 - LU632_RS05085 0.15 -1.7 990,624 - LU632_RS05085 0.63 +0.7 990,625 + LU632_RS05085 0.64 -1.7 990,625 + LU632_RS05085 0.64 +0.9 990,625 + LU632_RS05085 0.64 -0.6 990,625 + LU632_RS05085 0.64 -1.7 990,625 + LU632_RS05085 0.64 -1.7 990,626 - LU632_RS05085 0.64 -3.1 990,626 - LU632_RS05085 0.64 +2.5 990,626 - LU632_RS05085 0.64 -1.7 990,626 - LU632_RS05085 0.64 +0.1 990,626 - LU632_RS05085 0.64 +0.0 990,626 - LU632_RS05085 0.64 -0.5 990,626 - LU632_RS05085 0.64 +0.2 990,626 - LU632_RS05085 0.64 -0.5 990,626 - LU632_RS05085 0.64 -1.2 990,702 - LU632_RS05085 0.84 +0.6 990,738 - -1.8 990,738 - +0.3 990,744 - +1.1 990,747 + +1.4 990,748 - -1.5 990,748 - -0.3 990,748 - -0.0 990,748 - +0.8 990,749 + +2.8 990,755 + -2.5 990,916 + -0.2 990,917 - +0.3 990,922 + +0.6 991,011 + LU632_RS05090 0.33 -1.4 991,011 + LU632_RS05090 0.33 -2.7 991,011 + LU632_RS05090 0.33 -1.0 991,012 - LU632_RS05090 0.33 -0.4 991,014 + LU632_RS05090 0.34 +0.6 991,015 - LU632_RS05090 0.34 +2.3 991,025 + LU632_RS05090 0.37 -1.0 991,113 + LU632_RS05090 0.65 +0.2 991,113 + LU632_RS05090 0.65 +0.3 991,114 - LU632_RS05090 0.65 +1.7 991,117 + LU632_RS05090 0.66 -0.3 991,117 + LU632_RS05090 0.66 -1.2 991,117 + LU632_RS05090 0.66 -0.1 991,118 - LU632_RS05090 0.66 +0.8 991,118 - LU632_RS05090 0.66 +1.8 991,122 - LU632_RS05090 0.68 +0.2 991,122 - LU632_RS05090 0.68 -0.2 991,135 + LU632_RS05090 0.72 -1.4 991,225 + -0.5 991,225 + -1.3 991,229 + +0.8 991,229 + -2.6 991,230 - -2.2 991,255 - -1.4 991,255 - -0.0 991,257 - +1.5 991,257 - +2.4 991,257 - +0.3 991,307 + -0.4 991,407 + LU632_RS05095 0.21 -1.2 991,437 + LU632_RS05095 0.25 -1.6 991,437 + LU632_RS05095 0.25 -0.1 991,437 + LU632_RS05095 0.25 +1.3 991,437 + LU632_RS05095 0.25 -0.8 991,437 + LU632_RS05095 0.25 +3.8 991,438 - LU632_RS05095 0.25 -1.1 991,438 - LU632_RS05095 0.25 +1.8 991,438 - LU632_RS05095 0.25 +4.2 991,438 - LU632_RS05095 0.25 +0.2 991,439 + LU632_RS05095 0.25 -1.1 991,440 - LU632_RS05095 0.25 -1.3 991,440 - LU632_RS05095 0.25 -0.7 991,440 - LU632_RS05095 0.25 -1.4 991,650 + LU632_RS05095 0.51 -1.1 991,650 + LU632_RS05095 0.51 -1.9 991,767 + LU632_RS05095 0.65 -1.9 991,768 - LU632_RS05095 0.65 +0.5 991,770 + LU632_RS05095 0.65 -1.4 991,770 + LU632_RS05095 0.65 -2.4 991,770 + LU632_RS05095 0.65 +1.3 991,771 - LU632_RS05095 0.65 -1.9 991,772 + LU632_RS05095 0.65 -1.0 991,772 + LU632_RS05095 0.65 -0.2 991,772 + LU632_RS05095 0.65 -1.0 991,772 + LU632_RS05095 0.65 -1.2 991,772 + LU632_RS05095 0.65 -0.6 991,772 + LU632_RS05095 0.65 +0.8 991,773 - LU632_RS05095 0.65 -1.2 991,773 - LU632_RS05095 0.65 +1.8 991,776 + LU632_RS05095 0.66 +0.1 991,776 + LU632_RS05095 0.66 -1.0 991,776 + LU632_RS05095 0.66 +0.8 991,776 + LU632_RS05095 0.66 +0.7 991,776 + LU632_RS05095 0.66 -0.5 991,777 - LU632_RS05095 0.66 -0.5 991,777 - LU632_RS05095 0.66 +0.3 991,788 + LU632_RS05095 0.67 +1.6 991,855 + LU632_RS05095 0.75 +2.5 991,856 - LU632_RS05095 0.75 -1.1 991,856 - LU632_RS05095 0.75 +0.1 991,869 + LU632_RS05095 0.77 +1.4 991,986 + +0.9 991,989 + -1.0 991,989 + -1.3 991,990 - -0.7 991,990 - +1.6 991,990 - -0.9 992,049 + +1.0 992,050 - -1.7 992,050 - +0.1 992,052 + +1.0 992,052 + +1.6 992,068 + +0.2 992,090 + -1.0 992,091 - -1.0 992,091 - +1.5 992,092 + -1.7 992,092 + -1.1 992,093 - -0.2 992,093 - -0.7 992,093 - -0.2 992,093 - -0.5 992,093 - +1.5 992,146 + +0.6 992,180 + +0.5 992,271 + +1.2 992,277 - +1.0 992,304 + LU632_RS05100 0.14 +3.5 992,305 - LU632_RS05100 0.14 +1.1 992,336 + LU632_RS05100 0.23 +1.6 992,337 - LU632_RS05100 0.23 -0.2 992,337 - LU632_RS05100 0.23 -0.3 992,429 - LU632_RS05100 0.48 -0.2 992,463 - LU632_RS05100 0.58 -1.6 992,463 - LU632_RS05100 0.58 -0.5 992,463 - LU632_RS05100 0.58 -1.0 992,463 - LU632_RS05100 0.58 -0.3 992,488 + LU632_RS05100 0.64 +1.7 992,489 - LU632_RS05100 0.65 +1.4 992,749 + LU632_RS05105 0.14 -1.3 992,869 - LU632_RS05105 0.28 +0.2 992,899 - LU632_RS05105 0.32 +0.7 992,899 - LU632_RS05105 0.32 +0.8 992,899 - LU632_RS05105 0.32 +1.8 992,920 + LU632_RS05105 0.34 +1.1 992,923 + LU632_RS05105 0.35 +0.2 992,924 - LU632_RS05105 0.35 -1.4 992,924 - LU632_RS05105 0.35 +1.6 992,924 - LU632_RS05105 0.35 +0.7 992,958 + LU632_RS05105 0.39 +0.8 992,959 - LU632_RS05105 0.39 +3.1 992,959 - LU632_RS05105 0.39 -0.2 992,989 - LU632_RS05105 0.42 -0.2 993,013 - LU632_RS05105 0.45 +0.8 993,030 + LU632_RS05105 0.47 -0.1 993,031 - LU632_RS05105 0.47 +1.5 993,044 + LU632_RS05105 0.49 -1.7 993,045 - LU632_RS05105 0.49 -1.0 993,045 - LU632_RS05105 0.49 -0.8 993,045 - LU632_RS05105 0.49 -0.7
Or see this region's nucleotide sequence