Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05050 and LU632_RS05055 are separated by 304 nucleotides LU632_RS05055 and LU632_RS05060 overlap by 4 nucleotides
LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585
_RS05050
LU632_RS05055: LU632_RS05055 - TIGR03757 family integrating conjugative element protein, at 985,890 to 986,291
_RS05055
LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345
_RS05060
Position (kb) 985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 984.920 kb on - strand, within LU632_RS05050 at 985.046 kb on - strand, within LU632_RS05050 at 985.055 kb on - strand, within LU632_RS05050 at 985.174 kb on + strand, within LU632_RS05050 at 985.291 kb on - strand at 985.504 kb on + strand at 985.546 kb on - strand at 985.546 kb on - strand at 985.574 kb on + strand at 985.575 kb on - strand at 985.684 kb on + strand at 985.705 kb on + strand at 985.705 kb on + strand at 985.706 kb on - strand at 985.707 kb on + strand at 985.729 kb on - strand at 985.729 kb on - strand at 985.729 kb on - strand at 985.740 kb on + strand at 985.741 kb on - strand at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.958 kb on - strand, within LU632_RS05055 at 985.958 kb on - strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.960 kb on - strand, within LU632_RS05055 at 985.962 kb on - strand, within LU632_RS05055 at 986.161 kb on + strand, within LU632_RS05055 at 986.229 kb on + strand, within LU632_RS05055 at 986.230 kb on - strand, within LU632_RS05055 at 986.431 kb on + strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.502 kb on + strand, within LU632_RS05060 at 986.519 kb on - strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060 at 986.641 kb on - strand, within LU632_RS05060 at 986.703 kb on - strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.806 kb on - strand, within LU632_RS05060 at 986.823 kb on + strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 987.073 kb on + strand, within LU632_RS05060 at 987.074 kb on - strand, within LU632_RS05060 at 987.128 kb on + strand, within LU632_RS05060 at 987.129 kb on - strand, within LU632_RS05060 at 987.144 kb on + strand, within LU632_RS05060 at 987.145 kb on - strand, within LU632_RS05060 at 987.149 kb on + strand, within LU632_RS05060 at 987.150 kb on - strand, within LU632_RS05060 at 987.192 kb on - strand, within LU632_RS05060 at 987.197 kb on - strand, within LU632_RS05060 at 987.202 kb on + strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.228 kb on + strand, within LU632_RS05060 at 987.229 kb on - strand, within LU632_RS05060
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 984,920 - LU632_RS05050 0.82 +1.0 985,046 - LU632_RS05050 0.86 -0.3 985,055 - LU632_RS05050 0.86 +0.1 985,174 + LU632_RS05050 0.89 -1.2 985,291 - -1.5 985,504 + -0.5 985,546 - -2.0 985,546 - +0.3 985,574 + -2.1 985,575 - -2.4 985,684 + +1.1 985,705 + -1.0 985,705 + +2.8 985,706 - +0.3 985,707 + -0.7 985,729 - +1.5 985,729 - +1.2 985,729 - -0.8 985,740 + +0.3 985,741 - +0.8 985,957 + LU632_RS05055 0.17 -0.2 985,957 + LU632_RS05055 0.17 -0.0 985,957 + LU632_RS05055 0.17 -1.8 985,957 + LU632_RS05055 0.17 +1.8 985,958 - LU632_RS05055 0.17 -0.1 985,958 - LU632_RS05055 0.17 +0.9 985,959 + LU632_RS05055 0.17 +0.2 985,959 + LU632_RS05055 0.17 -0.3 985,959 + LU632_RS05055 0.17 -0.8 985,960 - LU632_RS05055 0.17 +2.2 985,962 - LU632_RS05055 0.18 +2.1 986,161 + LU632_RS05055 0.67 -0.5 986,229 + LU632_RS05055 0.84 +0.5 986,230 - LU632_RS05055 0.85 +2.0 986,431 + LU632_RS05060 0.14 +0.9 986,432 - LU632_RS05060 0.14 +0.0 986,432 - LU632_RS05060 0.14 -0.2 986,502 + LU632_RS05060 0.20 +0.4 986,519 - LU632_RS05060 0.22 -1.0 986,543 + LU632_RS05060 0.24 -0.4 986,543 + LU632_RS05060 0.24 -1.1 986,641 - LU632_RS05060 0.33 +0.0 986,703 - LU632_RS05060 0.39 -0.3 986,796 + LU632_RS05060 0.48 -2.0 986,796 + LU632_RS05060 0.48 -0.1 986,806 - LU632_RS05060 0.49 -1.3 986,823 + LU632_RS05060 0.51 +0.9 986,965 - LU632_RS05060 0.64 +0.1 986,965 - LU632_RS05060 0.64 -1.0 987,073 + LU632_RS05060 0.74 -1.0 987,074 - LU632_RS05060 0.74 -2.5 987,128 + LU632_RS05060 0.79 +0.6 987,129 - LU632_RS05060 0.79 -1.9 987,144 + LU632_RS05060 0.81 +0.8 987,145 - LU632_RS05060 0.81 -2.1 987,149 + LU632_RS05060 0.81 +0.4 987,150 - LU632_RS05060 0.81 +2.8 987,192 - LU632_RS05060 0.85 -0.5 987,197 - LU632_RS05060 0.86 +1.6 987,202 + LU632_RS05060 0.86 -0.4 987,203 - LU632_RS05060 0.86 +1.8 987,203 - LU632_RS05060 0.86 +1.1 987,228 + LU632_RS05060 0.89 +0.2 987,229 - LU632_RS05060 0.89 +2.1
Or see this region's nucleotide sequence