Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05030 and LU632_RS05035 are separated by 509 nucleotides LU632_RS05035 and LU632_RS05040 overlap by 1 nucleotides
LU632_RS05030: LU632_RS05030 - TIGR03752 family integrating conjugative element protein, at 977,024 to 977,569
_RS05030
LU632_RS05035: LU632_RS05035 - TIGR03751 family conjugal transfer lipoprotein, at 978,079 to 978,417
_RS05035
LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281
_RS05040
Position (kb) 978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 977.189 kb on - strand, within LU632_RS05030 at 977.223 kb on - strand, within LU632_RS05030 at 977.223 kb on - strand, within LU632_RS05030 at 977.288 kb on + strand, within LU632_RS05030 at 977.288 kb on + strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.302 kb on + strand, within LU632_RS05030 at 977.302 kb on + strand, within LU632_RS05030 at 977.303 kb on - strand, within LU632_RS05030 at 977.303 kb on - strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.436 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.500 kb on + strand, within LU632_RS05030 at 977.767 kb on + strand at 977.799 kb on + strand at 977.885 kb on - strand at 977.885 kb on - strand at 977.910 kb on + strand at 977.910 kb on + strand at 977.911 kb on - strand at 978.030 kb on + strand at 978.047 kb on + strand at 978.048 kb on - strand at 978.099 kb on + strand at 978.100 kb on - strand at 978.213 kb on + strand, within LU632_RS05035 at 978.301 kb on + strand, within LU632_RS05035 at 978.301 kb on + strand, within LU632_RS05035 at 978.302 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.368 kb on - strand, within LU632_RS05035 at 978.383 kb on - strand, within LU632_RS05035 at 978.383 kb on - strand, within LU632_RS05035 at 978.565 kb on - strand at 978.591 kb on + strand at 978.648 kb on - strand at 978.826 kb on - strand, within LU632_RS05040 at 978.839 kb on - strand, within LU632_RS05040 at 978.878 kb on + strand, within LU632_RS05040 at 978.879 kb on - strand, within LU632_RS05040 at 979.005 kb on - strand, within LU632_RS05040 at 979.088 kb on - strand, within LU632_RS05040 at 979.119 kb on - strand, within LU632_RS05040 at 979.203 kb on + strand, within LU632_RS05040 at 979.203 kb on + strand, within LU632_RS05040 at 979.203 kb on + strand, within LU632_RS05040 at 979.204 kb on - strand, within LU632_RS05040 at 979.204 kb on - strand, within LU632_RS05040 at 979.204 kb on - strand, within LU632_RS05040 at 979.321 kb on + strand, within LU632_RS05040 at 979.321 kb on + strand, within LU632_RS05040 at 979.331 kb on - strand, within LU632_RS05040 at 979.334 kb on + strand, within LU632_RS05040 at 979.335 kb on - strand, within LU632_RS05040 at 979.335 kb on - strand, within LU632_RS05040 at 979.335 kb on - strand, within LU632_RS05040 at 979.335 kb on - strand, within LU632_RS05040 at 979.338 kb on - strand, within LU632_RS05040 at 979.338 kb on - strand, within LU632_RS05040
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 977,189 - LU632_RS05030 0.30 +0.3 977,223 - LU632_RS05030 0.36 +0.5 977,223 - LU632_RS05030 0.36 -0.7 977,288 + LU632_RS05030 0.48 -1.0 977,288 + LU632_RS05030 0.48 +0.9 977,289 - LU632_RS05030 0.49 -1.9 977,289 - LU632_RS05030 0.49 -0.2 977,289 - LU632_RS05030 0.49 +0.2 977,302 + LU632_RS05030 0.51 +0.3 977,302 + LU632_RS05030 0.51 +2.0 977,303 - LU632_RS05030 0.51 -2.7 977,303 - LU632_RS05030 0.51 -0.9 977,435 + LU632_RS05030 0.75 +0.3 977,435 + LU632_RS05030 0.75 -0.2 977,435 + LU632_RS05030 0.75 +0.1 977,435 + LU632_RS05030 0.75 -0.7 977,436 - LU632_RS05030 0.75 -0.8 977,440 - LU632_RS05030 0.76 +2.7 977,440 - LU632_RS05030 0.76 -0.4 977,463 + LU632_RS05030 0.80 +1.3 977,463 + LU632_RS05030 0.80 -1.6 977,464 - LU632_RS05030 0.81 +2.5 977,464 - LU632_RS05030 0.81 -1.8 977,467 + LU632_RS05030 0.81 -0.3 977,467 + LU632_RS05030 0.81 +0.8 977,467 + LU632_RS05030 0.81 -0.2 977,467 + LU632_RS05030 0.81 +0.8 977,468 - LU632_RS05030 0.81 -2.7 977,468 - LU632_RS05030 0.81 -0.5 977,468 - LU632_RS05030 0.81 -3.1 977,500 + LU632_RS05030 0.87 +1.8 977,767 + -1.4 977,799 + +1.0 977,885 - -1.8 977,885 - -1.4 977,910 + -0.7 977,910 + +0.4 977,911 - -1.2 978,030 + +0.6 978,047 + -0.5 978,048 - -1.4 978,099 + -0.2 978,100 - -1.0 978,213 + LU632_RS05035 0.40 +0.5 978,301 + LU632_RS05035 0.65 -1.3 978,301 + LU632_RS05035 0.65 -1.1 978,302 - LU632_RS05035 0.66 -2.3 978,357 - LU632_RS05035 0.82 -0.9 978,357 - LU632_RS05035 0.82 +1.0 978,357 - LU632_RS05035 0.82 +0.2 978,357 - LU632_RS05035 0.82 -0.2 978,368 - LU632_RS05035 0.85 -1.0 978,383 - LU632_RS05035 0.90 +0.6 978,383 - LU632_RS05035 0.90 -1.4 978,565 - +0.2 978,591 + -3.2 978,648 - -0.8 978,826 - LU632_RS05040 0.14 +1.0 978,839 - LU632_RS05040 0.15 -1.9 978,878 + LU632_RS05040 0.16 -1.5 978,879 - LU632_RS05040 0.16 +0.9 979,005 - LU632_RS05040 0.21 -1.1 979,088 - LU632_RS05040 0.23 +2.4 979,119 - LU632_RS05040 0.25 -1.6 979,203 + LU632_RS05040 0.27 +0.5 979,203 + LU632_RS05040 0.27 -1.1 979,203 + LU632_RS05040 0.27 +0.2 979,204 - LU632_RS05040 0.27 +0.2 979,204 - LU632_RS05040 0.27 -0.5 979,204 - LU632_RS05040 0.27 -0.1 979,321 + LU632_RS05040 0.32 +1.8 979,321 + LU632_RS05040 0.32 +1.0 979,331 - LU632_RS05040 0.32 -0.0 979,334 + LU632_RS05040 0.32 +0.2 979,335 - LU632_RS05040 0.32 -0.2 979,335 - LU632_RS05040 0.32 -2.1 979,335 - LU632_RS05040 0.32 -1.0 979,335 - LU632_RS05040 0.32 +0.7 979,338 - LU632_RS05040 0.32 +1.0 979,338 - LU632_RS05040 0.32 +0.8
Or see this region's nucleotide sequence