Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04725 and LU632_RS04730 are separated by 126 nucleotides LU632_RS04730 and LU632_RS04735 are separated by 132 nucleotides LU632_RS04735 and LU632_RS04740 are separated by 69 nucleotides LU632_RS04740 and LU632_RS04745 are separated by 52 nucleotides
LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459
_RS04725
LU632_RS04730: LU632_RS04730 - DUF1090 domain-containing protein, at 929,586 to 930,020
_RS04730
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
LU632_RS04740: LU632_RS04740 - DNA topoisomerase IV subunit B, at 932,268 to 932,570
_RS04740
LU632_RS04745: LU632_RS04745 - IS3 family transposase, at 932,623 to 933,792
_RS04745
Position (kb) 930
931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 929.395 kb on + strand at 929.413 kb on + strand at 929.469 kb on + strand at 929.470 kb on - strand at 929.470 kb on - strand at 929.518 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.631 kb on - strand, within LU632_RS04730 at 929.631 kb on - strand, within LU632_RS04730 at 929.727 kb on - strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.783 kb on + strand, within LU632_RS04730 at 929.892 kb on - strand, within LU632_RS04730 at 929.904 kb on - strand, within LU632_RS04730 at 930.014 kb on + strand at 930.014 kb on + strand at 930.019 kb on - strand at 930.173 kb on + strand at 930.173 kb on + strand at 930.449 kb on + strand, within LU632_RS04735 at 930.471 kb on - strand, within LU632_RS04735 at 930.539 kb on + strand, within LU632_RS04735 at 930.573 kb on - strand, within LU632_RS04735 at 930.573 kb on - strand, within LU632_RS04735 at 930.679 kb on - strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.681 kb on - strand, within LU632_RS04735 at 930.681 kb on - strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.705 kb on - strand, within LU632_RS04735 at 930.705 kb on - strand, within LU632_RS04735 at 930.812 kb on + strand, within LU632_RS04735 at 930.992 kb on + strand, within LU632_RS04735 at 930.992 kb on + strand, within LU632_RS04735 at 931.029 kb on - strand, within LU632_RS04735 at 931.112 kb on - strand, within LU632_RS04735 at 931.112 kb on - strand, within LU632_RS04735 at 931.172 kb on + strand, within LU632_RS04735 at 931.570 kb on - strand, within LU632_RS04735 at 931.579 kb on - strand, within LU632_RS04735 at 931.622 kb on + strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.707 kb on + strand, within LU632_RS04735 at 931.708 kb on - strand, within LU632_RS04735 at 931.716 kb on - strand, within LU632_RS04735 at 931.743 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.848 kb on - strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.907 kb on - strand, within LU632_RS04735 at 931.995 kb on - strand at 932.312 kb on + strand, within LU632_RS04740 at 932.313 kb on - strand, within LU632_RS04740 at 932.555 kb on - strand at 932.578 kb on - strand at 932.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 929,395 + +0.3 929,413 + -1.0 929,469 + -0.2 929,470 - -0.7 929,470 - -0.1 929,518 + -0.2 929,563 + +0.3 929,563 + +3.7 929,563 + -1.2 929,563 + -0.8 929,631 - LU632_RS04730 0.10 -0.5 929,631 - LU632_RS04730 0.10 +2.5 929,727 - LU632_RS04730 0.32 +0.5 929,780 + LU632_RS04730 0.45 +0.3 929,780 + LU632_RS04730 0.45 -0.5 929,781 - LU632_RS04730 0.45 -0.9 929,781 - LU632_RS04730 0.45 +0.2 929,783 + LU632_RS04730 0.45 -1.2 929,892 - LU632_RS04730 0.70 +3.0 929,904 - LU632_RS04730 0.73 -0.5 930,014 + +1.2 930,014 + -1.7 930,019 - +1.8 930,173 + -3.4 930,173 + -0.1 930,449 + LU632_RS04735 0.14 -0.1 930,471 - LU632_RS04735 0.16 +3.0 930,539 + LU632_RS04735 0.19 +1.3 930,573 - LU632_RS04735 0.21 +3.6 930,573 - LU632_RS04735 0.21 -0.5 930,679 - LU632_RS04735 0.26 -3.0 930,680 + LU632_RS04735 0.26 +1.0 930,680 + LU632_RS04735 0.26 -0.4 930,680 + LU632_RS04735 0.26 +0.3 930,681 - LU632_RS04735 0.26 -1.0 930,681 - LU632_RS04735 0.26 +0.5 930,704 + LU632_RS04735 0.27 -1.5 930,704 + LU632_RS04735 0.27 -0.5 930,704 + LU632_RS04735 0.27 +0.4 930,704 + LU632_RS04735 0.27 -1.1 930,705 - LU632_RS04735 0.27 +0.2 930,705 - LU632_RS04735 0.27 +2.2 930,812 + LU632_RS04735 0.32 -1.0 930,992 + LU632_RS04735 0.41 -0.7 930,992 + LU632_RS04735 0.41 +0.7 931,029 - LU632_RS04735 0.43 -0.5 931,112 - LU632_RS04735 0.47 -0.1 931,112 - LU632_RS04735 0.47 -0.2 931,172 + LU632_RS04735 0.50 +1.5 931,570 - LU632_RS04735 0.69 +0.5 931,579 - LU632_RS04735 0.70 -2.4 931,622 + LU632_RS04735 0.72 +0.8 931,704 - LU632_RS04735 0.76 +0.3 931,704 - LU632_RS04735 0.76 -0.1 931,704 - LU632_RS04735 0.76 +1.4 931,707 + LU632_RS04735 0.76 -1.0 931,708 - LU632_RS04735 0.76 -1.5 931,716 - LU632_RS04735 0.76 -1.0 931,743 + LU632_RS04735 0.78 +0.0 931,775 + LU632_RS04735 0.79 +1.0 931,775 + LU632_RS04735 0.79 -0.2 931,821 + LU632_RS04735 0.82 +0.8 931,821 + LU632_RS04735 0.82 -1.2 931,821 + LU632_RS04735 0.82 -0.7 931,821 + LU632_RS04735 0.82 +2.5 931,821 + LU632_RS04735 0.82 +0.2 931,821 + LU632_RS04735 0.82 -0.3 931,822 - LU632_RS04735 0.82 -1.4 931,822 - LU632_RS04735 0.82 -0.4 931,848 - LU632_RS04735 0.83 -0.2 931,906 + LU632_RS04735 0.86 +0.0 931,906 + LU632_RS04735 0.86 +1.9 931,906 + LU632_RS04735 0.86 +3.2 931,907 - LU632_RS04735 0.86 +1.7 931,995 - -1.6 932,312 + LU632_RS04740 0.15 +0.2 932,313 - LU632_RS04740 0.15 -0.2 932,555 - +1.3 932,578 - -1.4 932,578 - -0.6
Or see this region's nucleotide sequence