Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04700 and LU632_RS04705 are separated by 256 nucleotides LU632_RS04705 and LU632_RS04710 are separated by 416 nucleotides
LU632_RS04700: LU632_RS04700 - HlyD family secretion protein, at 920,635 to 921,663
_RS04700
LU632_RS04705: LU632_RS04705 - helix-turn-helix domain-containing protein, at 921,920 to 922,945
_RS04705
LU632_RS04710: LU632_RS04710 - IS110 family transposase, at 923,362 to 924,359
_RS04710
Position (kb) 921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 920.925 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 921.022 kb on + strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.105 kb on + strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.195 kb on - strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.263 kb on - strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.666 kb on - strand at 921.670 kb on + strand at 921.671 kb on - strand at 921.745 kb on + strand at 921.806 kb on + strand at 921.807 kb on - strand at 921.819 kb on - strand at 921.891 kb on - strand at 922.322 kb on + strand, within LU632_RS04705 at 922.360 kb on - strand, within LU632_RS04705 at 923.083 kb on + strand at 923.084 kb on - strand at 923.085 kb on + strand at 923.086 kb on - strand at 923.087 kb on + strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.117 kb on - strand at 923.907 kb on - strand, within LU632_RS04710
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 920,925 - LU632_RS04700 0.28 +7.3 920,974 - LU632_RS04700 0.33 +0.8 920,974 - LU632_RS04700 0.33 +0.2 921,022 + LU632_RS04700 0.38 +0.7 921,023 - LU632_RS04700 0.38 -1.2 921,023 - LU632_RS04700 0.38 +2.0 921,105 + LU632_RS04700 0.46 +0.5 921,109 - LU632_RS04700 0.46 -0.4 921,109 - LU632_RS04700 0.46 +0.8 921,195 - LU632_RS04700 0.54 +2.0 921,213 + LU632_RS04700 0.56 +3.4 921,213 + LU632_RS04700 0.56 +2.8 921,213 + LU632_RS04700 0.56 +0.4 921,263 - LU632_RS04700 0.61 +1.6 921,376 + LU632_RS04700 0.72 -1.1 921,376 + LU632_RS04700 0.72 +0.7 921,376 + LU632_RS04700 0.72 -0.2 921,380 + LU632_RS04700 0.72 +0.6 921,380 + LU632_RS04700 0.72 +2.0 921,381 - LU632_RS04700 0.72 -1.2 921,381 - LU632_RS04700 0.72 +2.1 921,666 - -1.0 921,670 + -0.3 921,671 - +0.6 921,745 + -0.4 921,806 + -1.7 921,807 - -0.6 921,819 - +0.2 921,891 - +1.0 922,322 + LU632_RS04705 0.39 -1.2 922,360 - LU632_RS04705 0.43 -0.6 923,083 + -0.3 923,084 - +1.3 923,085 + +0.4 923,086 - -1.6 923,087 + -2.1 923,088 - -1.7 923,088 - +0.4 923,088 - +2.3 923,088 - +1.8 923,088 - +0.8 923,117 - +0.8 923,907 - LU632_RS04710 0.55 -1.7
Or see this region's nucleotide sequence