Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04580

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
897,378	+				-1.7
897,436	+				-2.4
897,436	+				+0.9
897,436	+				-2.1
897,436	+				+0.5
897,436	+				-1.2
897,437	-				-0.1
897,437	-				+0.3
897,437	-				-0.0
897,437	-				+0.8
897,449	+		LU632_RS04580	0.12	-1.0
897,583	-		LU632_RS04580	0.34	-0.6
897,583	-		LU632_RS04580	0.34	-0.2
897,586	-		LU632_RS04580	0.34	+0.2
897,747	-		LU632_RS04580	0.61	-0.7
897,747	-		LU632_RS04580	0.61	+0.4
897,747	-		LU632_RS04580	0.61	+1.1
897,759	+		LU632_RS04580	0.63	+3.6
897,762	-		LU632_RS04580	0.64	-0.8
897,762	-		LU632_RS04580	0.64	-2.0
897,762	-		LU632_RS04580	0.64	-2.3
897,842	+		LU632_RS04580	0.77	+0.5
897,842	+		LU632_RS04580	0.77	-1.0
897,843	-		LU632_RS04580	0.77	-0.2
897,843	-		LU632_RS04580	0.77	-1.5
898,021	+		LU632_RS04585	0.11	+0.6
898,022	-		LU632_RS04585	0.11	+1.8
898,025	+		LU632_RS04585	0.12	-0.6
898,025	+		LU632_RS04585	0.12	-0.9
898,025	+		LU632_RS04585	0.12	-0.0
898,025	+		LU632_RS04585	0.12	+0.3
898,025	+		LU632_RS04585	0.12	-0.9
898,026	-		LU632_RS04585	0.12	-1.2
898,026	-		LU632_RS04585	0.12	-0.2
898,029	+		LU632_RS04585	0.13	+2.4
898,029	+		LU632_RS04585	0.13	-0.4
898,030	-		LU632_RS04585	0.13	-0.6
898,045	-		LU632_RS04585	0.18	-2.1
898,062	-		LU632_RS04585	0.22	-0.6
898,084	+		LU632_RS04585	0.29	-2.1
898,119	-		LU632_RS04585	0.39	+0.2
898,311	-				-0.9