Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04480 and LU632_RS04485 are separated by 101 nucleotides LU632_RS04485 and LU632_RS04490 overlap by 4 nucleotides LU632_RS04490 and LU632_RS04495 overlap by 41 nucleotides LU632_RS04495 and LU632_RS04500 are separated by 238 nucleotides
LU632_RS04480: LU632_RS04480 - helix-turn-helix transcriptional regulator, at 882,347 to 882,751
_RS04480
LU632_RS04485: LU632_RS04485 - SDR family oxidoreductase, at 882,853 to 883,704
_RS04485
LU632_RS04490: LU632_RS04490 - hypothetical protein, at 883,701 to 884,051
_RS04490
LU632_RS04495: LU632_RS04495 - hypothetical protein, at 884,011 to 884,283
_RS04495
LU632_RS04500: LU632_RS04500 - hypothetical protein, at 884,522 to 884,725
_RS04500
Position (kb) 883
884
885 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 882.799 kb on - strand at 882.800 kb on + strand at 882.938 kb on + strand at 883.052 kb on + strand, within LU632_RS04485 at 883.056 kb on - strand, within LU632_RS04485 at 883.421 kb on - strand, within LU632_RS04485 at 883.829 kb on + strand, within LU632_RS04490 at 883.830 kb on - strand, within LU632_RS04490 at 883.833 kb on - strand, within LU632_RS04490 at 883.916 kb on - strand, within LU632_RS04490 at 883.918 kb on + strand, within LU632_RS04490 at 883.919 kb on - strand, within LU632_RS04490 at 884.088 kb on + strand, within LU632_RS04495 at 884.089 kb on - strand, within LU632_RS04495 at 884.089 kb on - strand, within LU632_RS04495 at 884.114 kb on - strand, within LU632_RS04495 at 884.122 kb on - strand, within LU632_RS04495 at 884.598 kb on + strand, within LU632_RS04500 at 884.598 kb on + strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.699 kb on - strand, within LU632_RS04500 at 884.713 kb on + strand at 884.713 kb on + strand at 884.713 kb on + strand at 884.714 kb on + strand at 884.714 kb on - strand at 884.718 kb on + strand at 884.739 kb on + strand at 884.739 kb on + strand at 884.751 kb on + strand at 884.766 kb on + strand at 884.766 kb on + strand at 884.766 kb on + strand at 884.767 kb on - strand at 884.837 kb on + strand at 884.838 kb on - strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.851 kb on - strand at 884.927 kb on - strand at 884.927 kb on - strand at 884.928 kb on + strand at 884.951 kb on - strand at 884.980 kb on - strand at 884.980 kb on - strand at 885.014 kb on + strand at 885.015 kb on - strand at 885.015 kb on - strand at 885.015 kb on - strand at 885.017 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 882,799 - +0.4 882,800 + +2.4 882,938 + -1.3 883,052 + LU632_RS04485 0.23 -1.1 883,056 - LU632_RS04485 0.24 -0.7 883,421 - LU632_RS04485 0.67 +2.9 883,829 + LU632_RS04490 0.36 +0.8 883,830 - LU632_RS04490 0.37 -0.3 883,833 - LU632_RS04490 0.38 +1.3 883,916 - LU632_RS04490 0.61 +1.8 883,918 + LU632_RS04490 0.62 -1.7 883,919 - LU632_RS04490 0.62 +2.9 884,088 + LU632_RS04495 0.28 -1.3 884,089 - LU632_RS04495 0.29 +1.9 884,089 - LU632_RS04495 0.29 +0.8 884,114 - LU632_RS04495 0.38 -0.0 884,122 - LU632_RS04495 0.41 +1.0 884,598 + LU632_RS04500 0.37 -1.5 884,598 + LU632_RS04500 0.37 +0.1 884,599 - LU632_RS04500 0.38 +0.6 884,599 - LU632_RS04500 0.38 +0.2 884,599 - LU632_RS04500 0.38 -0.6 884,599 - LU632_RS04500 0.38 +0.4 884,599 - LU632_RS04500 0.38 -0.6 884,699 - LU632_RS04500 0.87 +0.7 884,713 + -0.5 884,713 + -3.8 884,713 + +0.2 884,714 + +0.1 884,714 - -1.1 884,718 + +3.0 884,739 + +0.0 884,739 + -0.2 884,751 + -0.4 884,766 + -1.1 884,766 + -1.6 884,766 + +1.8 884,767 - +0.5 884,837 + +0.6 884,838 - +0.9 884,846 + -2.0 884,846 + -0.2 884,846 + +1.7 884,846 + +0.0 884,846 + -0.6 884,846 + +1.3 884,847 - +0.5 884,847 - -0.4 884,847 - +0.3 884,847 - +3.1 884,847 - +1.3 884,847 - +0.5 884,851 - +0.3 884,927 - +1.3 884,927 - -0.1 884,928 + +2.4 884,951 - +0.2 884,980 - -2.1 884,980 - -0.6 885,014 + +0.5 885,015 - -1.4 885,015 - +0.9 885,015 - +1.3 885,017 + +0.0
Or see this region's nucleotide sequence