Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04415

Experiment: plant=Squash; plant sample=QP1; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04410 and LU632_RS04415 are separated by 30 nucleotidesLU632_RS04415 and LU632_RS04420 are separated by 134 nucleotidesLU632_RS04420 and LU632_RS04425 are separated by 571 nucleotides LU632_RS04410: LU632_RS04410 - Tn3 family transposase, at 869,812 to 872,322 _RS04410 LU632_RS04415: LU632_RS04415 - IS91 family transposase, at 872,353 to 873,576 _RS04415 LU632_RS04420: LU632_RS04420 - hypothetical protein, at 873,711 to 873,869 _RS04420 LU632_RS04425: LU632_RS04425 - DNA-binding protein, at 874,441 to 874,797 _RS04425 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 871.681 kb on - strand, within LU632_RS04410at 871.910 kb on - strand, within LU632_RS04410at 874.095 kb on + strandat 874.247 kb on - strandat 874.321 kb on + strandat 874.321 kb on + strandat 874.545 kb on + strand, within LU632_RS04425at 874.546 kb on - strand, within LU632_RS04425

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA
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871,681 - LU632_RS04410 0.74 +0.6
871,910 - LU632_RS04410 0.84 +0.9
874,095 + +4.4
874,247 - +1.0
874,321 + +1.9
874,321 + -0.2
874,545 + LU632_RS04425 0.29 -2.7
874,546 - LU632_RS04425 0.29 +2.3

Or see this region's nucleotide sequence