Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04390 and LU632_RS04395 are separated by 27 nucleotides LU632_RS04395 and LU632_RS04400 are separated by 27 nucleotides LU632_RS04400 and LU632_RS04405 are separated by 150 nucleotides LU632_RS04405 and LU632_RS04410 are separated by 44 nucleotides
LU632_RS04390: LU632_RS04390 - N-acetylmuramoyl-L-alanine amidase, at 867,611 to 868,225
_RS04390
LU632_RS04395: LU632_RS04395 - type VI secretion system tube protein Hcp, at 868,253 to 868,735
_RS04395
LU632_RS04400: LU632_RS04400 - recombinase family protein, at 868,763 to 869,344
_RS04400
LU632_RS04405: LU632_RS04405 - DUF4158 domain-containing protein, at 869,495 to 869,767
_RS04405
LU632_RS04410: LU632_RS04410 - Tn3 family transposase, at 869,812 to 872,322
_RS04410
Position (kb) 868
869
870 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 868.139 kb on - strand, within LU632_RS04390 at 868.229 kb on + strand at 868.391 kb on - strand, within LU632_RS04395 at 868.391 kb on - strand, within LU632_RS04395 at 868.501 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.555 kb on - strand, within LU632_RS04395 at 868.973 kb on - strand, within LU632_RS04400 at 868.973 kb on - strand, within LU632_RS04400 at 869.006 kb on + strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.159 kb on - strand, within LU632_RS04400 at 869.345 kb on - strand at 869.439 kb on + strand at 869.476 kb on + strand at 869.515 kb on + strand at 870.017 kb on - strand at 870.017 kb on - strand at 870.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 868,139 - LU632_RS04390 0.86 -1.5 868,229 + -0.6 868,391 - LU632_RS04395 0.29 -0.3 868,391 - LU632_RS04395 0.29 -0.7 868,501 + LU632_RS04395 0.51 -0.2 868,554 + LU632_RS04395 0.62 +0.6 868,554 + LU632_RS04395 0.62 +4.7 868,555 - LU632_RS04395 0.63 -1.7 868,973 - LU632_RS04400 0.36 -0.9 868,973 - LU632_RS04400 0.36 -0.0 869,006 + LU632_RS04400 0.42 +0.5 869,007 - LU632_RS04400 0.42 +0.4 869,007 - LU632_RS04400 0.42 -0.5 869,046 + LU632_RS04400 0.49 +0.4 869,046 + LU632_RS04400 0.49 -1.5 869,159 - LU632_RS04400 0.68 +5.4 869,345 - +1.3 869,439 + +0.8 869,476 + +0.9 869,515 + +0.4 870,017 - -1.6 870,017 - -2.7 870,059 - -0.4
Or see this region's nucleotide sequence