Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04290 and LU632_RS04295 are separated by 187 nucleotides LU632_RS04295 and LU632_RS04300 are separated by 44 nucleotides LU632_RS04300 and LU632_RS04305 overlap by 9 nucleotides LU632_RS04305 and LU632_RS04310 are separated by 860 nucleotides
LU632_RS04290: LU632_RS04290 - hypothetical protein, at 853,384 to 854,223
_RS04290
LU632_RS04295: LU632_RS04295 - IS91 family transposase, at 854,411 to 854,548
_RS04295
LU632_RS04300: LU632_RS04300 - IS3 family transposase, at 854,593 to 854,838
_RS04300
LU632_RS04305: LU632_RS04305 - DNA primase, at 854,830 to 855,231
_RS04305
LU632_RS04310: LU632_RS04310 - IS3 family transposase, at 856,092 to 857,256
_RS04310
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 854.192 kb on + strand at 854.309 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.583 kb on + strand at 854.584 kb on - strand at 854.590 kb on + strand at 854.591 kb on - strand at 854.677 kb on - strand, within LU632_RS04300 at 854.723 kb on + strand, within LU632_RS04300 at 854.813 kb on + strand, within LU632_RS04300 at 854.814 kb on - strand at 854.994 kb on + strand, within LU632_RS04305 at 855.244 kb on - strand at 855.244 kb on - strand at 855.434 kb on - strand at 855.488 kb on - strand at 855.551 kb on - strand at 855.596 kb on - strand at 855.598 kb on + strand at 855.657 kb on - strand at 855.689 kb on + strand at 855.757 kb on + strand at 855.760 kb on + strand at 855.760 kb on + strand at 855.761 kb on - strand at 855.838 kb on + strand at 855.839 kb on - strand at 855.841 kb on + strand at 855.842 kb on - strand at 855.851 kb on + strand at 855.895 kb on + strand at 855.895 kb on + strand at 855.896 kb on - strand at 855.960 kb on + strand at 855.960 kb on + strand at 855.960 kb on + strand at 855.960 kb on + strand at 855.961 kb on - strand at 856.005 kb on - strand at 856.053 kb on + strand at 856.053 kb on + strand at 856.054 kb on - strand at 856.054 kb on - strand at 856.054 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 854,192 + -0.1 854,309 + -1.7 854,424 + +1.4 854,424 + -0.5 854,424 + -0.6 854,424 + -0.2 854,425 - LU632_RS04295 0.10 -1.1 854,425 - LU632_RS04295 0.10 -1.8 854,425 - LU632_RS04295 0.10 +0.2 854,425 - LU632_RS04295 0.10 -1.0 854,425 - LU632_RS04295 0.10 -1.1 854,425 - LU632_RS04295 0.10 +0.8 854,583 + -0.1 854,584 - -0.3 854,590 + -0.8 854,591 - +0.9 854,677 - LU632_RS04300 0.34 -1.3 854,723 + LU632_RS04300 0.53 +1.9 854,813 + LU632_RS04300 0.89 +1.4 854,814 - +1.8 854,994 + LU632_RS04305 0.41 +0.3 855,244 - -1.0 855,244 - -0.8 855,434 - +0.1 855,488 - -0.6 855,551 - -0.5 855,596 - -0.1 855,598 + +1.9 855,657 - +0.7 855,689 + +0.2 855,757 + -1.2 855,760 + +0.4 855,760 + -1.5 855,761 - +3.5 855,838 + -1.6 855,839 - +0.1 855,841 + -1.4 855,842 - +0.2 855,851 + -0.8 855,895 + +0.0 855,895 + -1.0 855,896 - -0.8 855,960 + -0.1 855,960 + -0.6 855,960 + -1.3 855,960 + +1.1 855,961 - +2.4 856,005 - +0.1 856,053 + +0.1 856,053 + +0.9 856,054 - -0.0 856,054 - -1.0 856,054 - +2.8
Or see this region's nucleotide sequence