Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt katB and LU632_RS04180 are separated by 362 nucleotides LU632_RS04180 and LU632_RS04185 are separated by 350 nucleotides
LU632_RS04175: katB - catalase, at 828,476 to 829,942
katB
LU632_RS04180: LU632_RS04180 - hypothetical protein, at 830,305 to 830,469
_RS04180
LU632_RS04185: LU632_RS04185 - transglycosylase SLT domain-containing protein, at 830,820 to 831,302
_RS04185
Position (kb) 830
831 Strain fitness (log2 ratio) -2
-1
0
1
2 at 829.314 kb on + strand, within katB at 829.348 kb on - strand, within katB at 829.361 kb on - strand, within katB at 829.364 kb on - strand, within katB at 829.393 kb on + strand, within katB at 829.393 kb on + strand, within katB at 829.484 kb on - strand, within katB at 829.484 kb on - strand, within katB at 829.572 kb on - strand, within katB at 829.572 kb on - strand, within katB at 829.656 kb on - strand, within katB at 829.706 kb on + strand, within katB at 829.707 kb on - strand, within katB at 829.733 kb on - strand, within katB at 829.733 kb on - strand, within katB at 829.784 kb on + strand, within katB at 829.923 kb on - strand at 830.023 kb on + strand at 830.023 kb on + strand at 830.024 kb on - strand at 830.137 kb on + strand at 830.230 kb on + strand at 830.230 kb on + strand at 830.230 kb on + strand at 830.231 kb on - strand at 830.263 kb on + strand at 830.263 kb on + strand at 830.264 kb on - strand at 830.264 kb on - strand at 830.264 kb on - strand at 830.282 kb on + strand at 830.283 kb on - strand at 830.348 kb on - strand, within LU632_RS04180 at 830.369 kb on + strand, within LU632_RS04180 at 830.369 kb on + strand, within LU632_RS04180 at 830.372 kb on + strand, within LU632_RS04180 at 830.458 kb on - strand at 830.556 kb on - strand at 830.588 kb on + strand at 830.589 kb on - strand at 830.589 kb on - strand at 830.631 kb on + strand at 830.632 kb on - strand at 830.632 kb on - strand at 830.632 kb on - strand at 830.654 kb on - strand at 830.727 kb on - strand at 830.730 kb on + strand at 830.734 kb on - strand at 831.128 kb on - strand, within LU632_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 829,314 + katB LU632_RS04175 0.57 -0.6 829,348 - katB LU632_RS04175 0.59 -1.2 829,361 - katB LU632_RS04175 0.60 -0.4 829,364 - katB LU632_RS04175 0.61 +1.0 829,393 + katB LU632_RS04175 0.63 -1.0 829,393 + katB LU632_RS04175 0.63 +1.1 829,484 - katB LU632_RS04175 0.69 -2.1 829,484 - katB LU632_RS04175 0.69 -0.3 829,572 - katB LU632_RS04175 0.75 -1.5 829,572 - katB LU632_RS04175 0.75 -0.8 829,656 - katB LU632_RS04175 0.80 -0.2 829,706 + katB LU632_RS04175 0.84 -0.8 829,707 - katB LU632_RS04175 0.84 -1.2 829,733 - katB LU632_RS04175 0.86 -2.1 829,733 - katB LU632_RS04175 0.86 +1.8 829,784 + katB LU632_RS04175 0.89 +0.6 829,923 - -1.9 830,023 + -1.5 830,023 + +0.7 830,024 - -0.8 830,137 + +0.4 830,230 + +0.0 830,230 + -0.9 830,230 + +0.2 830,231 - -2.6 830,263 + +0.9 830,263 + +1.4 830,264 - -0.8 830,264 - -0.2 830,264 - -0.2 830,282 + +1.3 830,283 - +1.9 830,348 - LU632_RS04180 0.26 -2.3 830,369 + LU632_RS04180 0.39 -1.0 830,369 + LU632_RS04180 0.39 -1.5 830,372 + LU632_RS04180 0.41 -0.6 830,458 - -0.2 830,556 - +0.5 830,588 + +0.6 830,589 - +0.3 830,589 - +0.8 830,631 + +1.0 830,632 - -2.2 830,632 - -0.6 830,632 - +0.7 830,654 - +0.8 830,727 - +0.2 830,730 + -0.4 830,734 - +0.5 831,128 - LU632_RS04185 0.64 +0.5
Or see this region's nucleotide sequence