Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04105 and LU632_RS04110 are separated by 123 nucleotides LU632_RS04110 and LU632_RS04115 are separated by 37 nucleotides LU632_RS04115 and radC are separated by 11 nucleotides
LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663
_RS04105
LU632_RS04110: LU632_RS04110 - DUF945 domain-containing protein, at 817,787 to 818,608
_RS04110
LU632_RS04115: LU632_RS04115 - antirestriction protein, at 818,646 to 819,125
_RS04115
LU632_RS04120: radC - DNA repair protein RadC, at 819,137 to 819,616
radC
Position (kb) 817
818
819 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 816.856 kb on + strand, within LU632_RS04105 at 816.857 kb on - strand, within LU632_RS04105 at 816.900 kb on - strand, within LU632_RS04105 at 817.082 kb on + strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.133 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.393 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.463 kb on + strand, within LU632_RS04105 at 817.527 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.564 kb on - strand, within LU632_RS04105 at 817.634 kb on - strand at 817.639 kb on - strand at 817.712 kb on + strand at 817.712 kb on + strand at 817.718 kb on + strand at 817.782 kb on + strand at 817.783 kb on - strand at 817.783 kb on - strand at 817.936 kb on + strand, within LU632_RS04110 at 817.936 kb on + strand, within LU632_RS04110 at 818.127 kb on + strand, within LU632_RS04110 at 818.128 kb on - strand, within LU632_RS04110 at 818.243 kb on + strand, within LU632_RS04110 at 818.244 kb on - strand, within LU632_RS04110 at 818.308 kb on - strand, within LU632_RS04110 at 818.506 kb on + strand, within LU632_RS04110 at 818.535 kb on + strand at 818.535 kb on + strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.585 kb on - strand at 818.585 kb on - strand at 818.602 kb on + strand at 818.625 kb on - strand at 818.716 kb on + strand, within LU632_RS04115 at 818.807 kb on + strand, within LU632_RS04115 at 818.921 kb on + strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.926 kb on + strand, within LU632_RS04115 at 819.007 kb on + strand, within LU632_RS04115 at 819.007 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.156 kb on + strand at 819.171 kb on + strand at 819.228 kb on + strand, within radC at 819.229 kb on - strand, within radC at 819.352 kb on + strand, within radC at 819.353 kb on - strand, within radC
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 816,856 + LU632_RS04105 0.14 -1.3 816,857 - LU632_RS04105 0.14 -0.9 816,900 - LU632_RS04105 0.19 +0.9 817,082 + LU632_RS04105 0.38 -0.3 817,098 - LU632_RS04105 0.40 -0.0 817,098 - LU632_RS04105 0.40 +2.4 817,098 - LU632_RS04105 0.40 +2.0 817,133 + LU632_RS04105 0.44 +0.4 817,203 + LU632_RS04105 0.51 +0.5 817,203 + LU632_RS04105 0.51 +0.8 817,203 + LU632_RS04105 0.51 +0.5 817,203 + LU632_RS04105 0.51 +0.8 817,203 + LU632_RS04105 0.51 +0.5 817,204 - LU632_RS04105 0.51 -0.4 817,204 - LU632_RS04105 0.51 +0.6 817,373 + LU632_RS04105 0.69 -0.2 817,373 + LU632_RS04105 0.69 +1.2 817,374 - LU632_RS04105 0.69 -0.3 817,374 - LU632_RS04105 0.69 +0.6 817,393 + LU632_RS04105 0.71 -1.2 817,405 + LU632_RS04105 0.73 +0.2 817,405 + LU632_RS04105 0.73 -0.8 817,406 - LU632_RS04105 0.73 +0.8 817,406 - LU632_RS04105 0.73 +0.8 817,406 - LU632_RS04105 0.73 -0.5 817,463 + LU632_RS04105 0.79 +2.0 817,527 - LU632_RS04105 0.85 -0.5 817,553 - LU632_RS04105 0.88 -0.8 817,553 - LU632_RS04105 0.88 -0.1 817,564 - LU632_RS04105 0.89 +2.5 817,634 - +0.5 817,639 - -2.0 817,712 + -0.2 817,712 + -0.9 817,718 + +1.3 817,782 + +1.8 817,783 - -0.4 817,783 - -0.7 817,936 + LU632_RS04110 0.18 +1.4 817,936 + LU632_RS04110 0.18 +2.5 818,127 + LU632_RS04110 0.41 -1.6 818,128 - LU632_RS04110 0.41 -1.9 818,243 + LU632_RS04110 0.55 -1.3 818,244 - LU632_RS04110 0.56 -0.2 818,308 - LU632_RS04110 0.63 -0.2 818,506 + LU632_RS04110 0.87 +7.4 818,535 + +0.8 818,535 + -0.6 818,536 - -0.2 818,536 - -0.8 818,536 - -0.8 818,536 - -0.1 818,585 - -0.5 818,585 - -0.3 818,602 + +0.2 818,625 - +0.2 818,716 + LU632_RS04115 0.15 +2.1 818,807 + LU632_RS04115 0.34 +0.2 818,921 + LU632_RS04115 0.57 -1.3 818,922 - LU632_RS04115 0.57 -0.8 818,922 - LU632_RS04115 0.57 +1.1 818,922 - LU632_RS04115 0.57 +0.2 818,926 + LU632_RS04115 0.58 +1.2 819,007 + LU632_RS04115 0.75 -0.2 819,007 + LU632_RS04115 0.75 +0.2 819,057 + LU632_RS04115 0.86 +0.6 819,057 + LU632_RS04115 0.86 +1.5 819,057 + LU632_RS04115 0.86 +0.2 819,156 + +0.8 819,171 + -0.1 819,228 + radC LU632_RS04120 0.19 -1.5 819,229 - radC LU632_RS04120 0.19 +0.8 819,352 + radC LU632_RS04120 0.45 +3.8 819,353 - radC LU632_RS04120 0.45 -1.2
Or see this region's nucleotide sequence